Array 1 32525-34330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFI01000002.1 Thermotoga sp. TBGT1766 Contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 32525 29 100.0 36 ............................. GCTTACTTCTTTGCATAAGTAGTTCTGGGAACTCCA 32590 29 100.0 37 ............................. GATCGATGCCGATTTGCACTTTGTGTTCTGTTTTTTT 32656 29 100.0 36 ............................. GACGGCACTGTGTTTCTGCACGGGAGGGCTGTAGTC 32721 29 100.0 37 ............................. GCAGAAAAAGTTCGAACATCTTTCTGACCACAACTGC 32787 29 100.0 38 ............................. AGAATTTCAGCTATTTTGTACTGTGAAAGACCCATTTT 32854 29 100.0 36 ............................. GATCCTTGTTGAATGGAAATTACTTGACTGGTTAAG 32919 29 100.0 37 ............................. GATATACCCAGTGAAGGCATACGTTTCTCGATACGAA 32985 29 100.0 37 ............................. ATGACGAATGCCAGGATTGAGAGGACAGCGATGCTGA 33051 29 100.0 35 ............................. GCAGATCACAGGTATAAGCGATGTGGACATACTGA 33115 29 100.0 36 ............................. ACTATATGTGGTATTCTATTTTTAAAGAACACAATA 33180 29 100.0 37 ............................. GCTCCTAAAGCAAAGAGATCGTAGTACCATGTGTAGG 33246 29 100.0 36 ............................. TAGAAAAATATGTACCAGAGGAGAAACTCAAAAGAA 33311 29 100.0 38 ............................. GCTGGAACATACGAAACGATCTCCCTTTCGGACTACGC 33378 29 100.0 36 ............................. ACACCTTTGAAATTCGAATGTCAGATCGTTTCAATC 33443 29 100.0 39 ............................. GACATAGACACAACACGAAGTTTCATAGGAAGGGTACTG 33511 29 100.0 37 ............................. AATGGAAACACCTGTAGCTTGAGAGTGAGAGTCTTTC 33577 29 100.0 36 ............................. CCTTCATCTCCCTCCTTTTGCTTCTCCTCTCTGTAT 33642 29 100.0 35 ............................. AAAATGGCCTCTCTTGCTTGCTCTTTTTCTTCCTC 33706 29 100.0 37 ............................. TATGTCGGCGTTTTCGAAAAGATCGTAGTCACCCCTG 33772 29 100.0 37 ............................. TTTCTGTGTAAGCTTCTTGATCTCCTGTTCGATATTA 33838 29 100.0 37 ............................. TCCACAGAGCAAAAGCGAATCTGAATGAGAAAGGAAG 33904 29 100.0 36 ............................. TTTCGTCGTAGACAACTATCTCTCTTTTTACTGTCA 33969 29 100.0 36 ............................. CTTTTCATAGACGATGTGGACACTGAAGGGAAAAGA 34034 29 100.0 37 ............................. GTGATCTGCTGGGTGATGTACTTTCCGATCGAAAAGG 34100 29 100.0 38 ............................. ATCAAAACAAGCAGTAACCGAAACCGCACAGCCTACTA 34167 29 100.0 38 ............................. TCGGAAAGCCCCAATTTGATATGAGTAGTAATAGCCTC 34234 29 96.6 37 ............................T GGCGTGATGTGATAGATGGAAAGGTGAACCACTGCTA 34300 29 82.8 0 T........C.........A.....A..T | T,C [34315,34323] ========== ====== ====== ====== ============================= ======================================= ================== 28 29 99.3 37 GTTTTTATCTTCCTAAGAGGAATATGAAC # Left flank : CAACAAACAGTTCTTCATAGAAAGCTGAAGAGAAAGGTTAAATATCAATCTTTCATAAGATTGGAGGCTTATAAAATAATCAAACATCTGCTTGGAGAAGATGAGTACAGGCCTCTCAAAGTCTGGTGGTAGGTGATATCAATGAGGGTAATTTTGGTTTACGACATTTCTACTGAGACAAAAGAAGGAGTGAGGCGATTAAACAGAGTAAGGAAAATAGCTAGAAGATATCTAGACCATGTTCAAAAGTCAGTTTTTGAAGGTGAACTAACGGAGGGAGAAATCGAGAAACTGAAATTTGAACTACAATGCATCATTGATAATGACGAAGACTTTGTGATAATTTACAAAATGCCACCTTCTATTATGATAGAAAGAGACATCCTGACCAACACGGACGATCCAACATCTAATTTCATTTAAACAAAACCGGAGGTTTGACGCAATACTCATCTAACAAATGTTCTATAATGTGTTTTTTTACTGAAAAGCTGAATGCG # Right flank : TCAATAAGAATTCCCGCATCAAGCGGGGCTTTTTTCTTACACATTTTTTGAAATCTGTACTCAAGGGGGATGGATGGGATATCAAGCAAGACAAGAAAAAAATTAAAAACGAACTTTTGTTGGAAAGAGAGTTTCTGTTAGAGGGAAAATCAAAGTGTTTGGTACCACAGGAAGTCCTTTCTCGAAAAAAACAATTCTTATAACAACTGTGAGGTATTTAGATAAAAAGATCAAGATAGATCATCTGTGGGTTTCGATCAAAAAAGGCACTGAAAATATGGATAAGAATTTTATAACCCTTTGAAATGCGCTTTTGAGAGTTCTTTAAGGAGGTGTTTGGTACGATGATTTTTGTGGGAGATATCAGCACGCTGGATATGTGCAGGCGTAATCATGCGGGAGAAATTAAGCTCAAAGATGTCCTGACTAAGAACGAGGGATTGCAACGTCTTCAGAAGCTAAGATGGTGGTACCTGTACGAGGTACCAGCGACCATGGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTCCTAAGAGGAATATGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 332-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFI01000007.1 Thermotoga sp. TBGT1766 Contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 331 31 74.2 35 T...TTG.G.T........TG.......... ATGTACCACGATTGGTATGTCTCCGGCGTCGGAAT 265 31 96.8 35 ..............................C GCTGCGGCTTTCTACCATACACGGCTGCGAAGTAG 199 31 100.0 36 ............................... AGAGATAAGAAAGAAGTGGTATCAGAACAGCTCGAG 132 31 100.0 36 ............................... ACATATCGGTTGTTGAAAAGGAAGGTGAGAAATATT 65 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 5 31 94.2 36 GTTTCCATACCTCTAAGGAATTATTGAAACG # Left flank : CTTCCTCGCAGAAAGTCTGAAAATATCCGGACTACTTCCCGCTCTTGCCGTTGGATTTCTCATGTCAGTTACCATTGCAAGCTTTGGTATTGCGCTTGCTTTGAAGATGGAAAGCACTGAGGGATTCCAGATGATCATGATGGCTCTGATGATGCCTCTGGTCTTTCTGAGCGGTGCAATGTATCCCATCGATTCCATGCCAAACTGGATGAAGGCTCTTGCCTACATAAATCCCCTCACCTACGCGGTGGACGCCTCGAGAGGGTACTTAGTGGGAGAAAAAGTGATGAAGTTCTCCTTCGGCCTCGATTGGGGAATTCTCTCGATCTTGATGCTGGTGGGGCTCATCCTCGCAATGGAAAGCTTCGAAAGAGCAAGGATAAGTTGAGATATCAACAGCAAAAACGAAGGCAGGGGGTTTCCCTGCCTTTTTGTTTTTTTATGGAGCTTCATTGAATATGAAATGCTAACAGAAACAACGATTTCGGAAAAGAAGAAGT # Right flank : GCGGTATAGCGTCGGTACTAGACATAACGTATTCC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 1267-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFI01000005.1 Thermotoga sp. TBGT1766 Contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1266 30 100.0 36 .............................. ATATCACCTTACAAGACAAAAACGAAGACAAAATTT 1200 30 100.0 36 .............................. TCAGGCTGACTGACAAAATGAATAGACTTGAGAAAT 1134 30 100.0 36 .............................. CGACAATGAATCCATCACGGGTTTTCAGAACGCACT 1068 30 100.0 37 .............................. ACAAAAACGTTTCCCAAATCTCTCAGCATTCCCACCG 1001 30 100.0 38 .............................. AATGAAAGCCCAGAGTAGCGGGAAAGCCCCCGAAAAAA 933 30 100.0 36 .............................. CGTCAAAGCCCTAGCGTGCGACCTCGTTGCTGTAGC 867 30 100.0 37 .............................. AAGATGCATTACAACTGTATAGAGAACTCTTACCAGG 800 30 100.0 36 .............................. AGATTCGAGCAAGATTTGGCCATATGGTCGAAGCAA 734 30 100.0 36 .............................. TGGTTCAGAGTATGGCAAAACCATCTGAAATACAAA 668 30 100.0 37 .............................. TAGTCCAAAGCCCTTGCATGGTCAAAGCCTATGCCGT 601 30 100.0 39 .............................. CCCGTGACCTTGTGAAGCGCAATTCGATGACATACGTTT 532 30 100.0 38 .............................. TAGCCGCCTATTGCCTATTTTGTAACGTAGATGTAACT 464 30 100.0 37 .............................. AAGCCGAGTGGGAAAAGCTCGCAGAAGAAGAGCCGAC 397 30 100.0 38 .............................. TTTTGCGTCCTTTGTTGGTTCTATCTCAAATGTGAAGA 329 30 100.0 36 .............................. TGATGAAGTTGGATTCAATATCGTAAAAGTCAACGC 263 30 100.0 37 .............................. ACATGAAAGTAGTTGAAAAGGCTGTGGAATGGTGCTA 196 30 100.0 36 .............................. GTCTCGACCGTGATCTTTCACATAAAACGTTCCGTG 130 30 100.0 35 .............................. AGAGATAAACACCTATTACAATCTCTACTCGGGAG 65 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 100.0 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : AAATAAGGAAAATTCTGAGACTCTACGATGTGGACAGTGCGGATGGTATTTTCCGGTCGAGTGATGGAAACTTCAAGGGCTACATCAGCCTGCCGGATCGTTATCTCTCCAAGAGAGAAATAAAAAAACTCTCGGCGATTTCTCCAAACACCACAGTCAACATCATAAAAAACAGCACGGTTGTTGAAAAATACAGAATAAAGCTTCCACCAACGATCTATGGATTTGAGGAACTCCGATGCAAAAACGAGAACTGCATCACCAATCCCGCACACGGCGAAAATGCTTCACCTTCCTTTGTGAGAGACGAAAAAGGACAGTTTATATGCGAGTACTGTGAAACACCGCATTCTTTCGAAGAAATCTGGAGTATTTGAGAAATCTACAAGAAAAAGAAAGCAGGGGAATTTTCCCCTGCTCTTTTTATTTTATAACCCTTTAAAAGCTTATGTGAACTTGGTTAATGTTTCTATACCTCAAATCAGGCCCGTTAGAGCCGG # Right flank : CTGAAGTGTATGCAACAGAACGAACTTTTTGGAATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 2 102069-102432 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFI01000005.1 Thermotoga sp. TBGT1766 Contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 102069 30 70.0 37 TG...TG.......G.A..TGC........ TGATTCAATATCGTGGGCCACGACTACAGGGGGAAGC T [102072] 102137 30 96.7 36 ....................G......... GAACAGGCAGTTGGTAGACCCCACAGAACGGCGCGT A [102150] 102204 30 100.0 37 .............................. TGTGCCATTTGCCAATTTCTGCACTTAGATCGAATCC 102271 30 100.0 36 .............................. TCAGCGTGTTCTTCGTGTGTTTCAACTTTTCAACTA 102337 30 100.0 36 .............................. TTGAAGTCTGGGTAGGAGAACCGTACGAAATAATCA 102403 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 94.5 37 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : TCTTGTGAGCCATGTTTCCATGGCAAAGTTCAAAGGCAGAGACGGTTCGTGGTGAATATCGAAAGAAACTTCGACGGAAAATGATTTCATAGAGGAAACAGGTACTGGAAGTTTCGAACCTTCTGCTGTGTGATTTTCCCATGGTTTGTAACCGTAATAAAACTCGGGATAACCGAGAATATACCTTTCCGGTTCTTTCGGAGAAAGATTCTGAATGTCCGCGTCGAAAGTTATCTTTTCACCGTCGAATTTCATAGCTACAGAACCGGAGTATTCCTTTATGTTCCACAGATTCAGCTCCATGGAAAGGGGAATGCCATTCCATACAAAATCCGATGTTCCCGGTTTTGTCATCAGTACCACCATTATCACCTCCAGAAAACATCTTATTATGAAAATGTTTACATTCAAAATCTGAAAATTCGCAAATAGAACTAAATACACCCAAAAATAAAAAAACAGGGGTATTAATCCCTGCTTTTCTCTTTTTATCGGATTTT # Right flank : TGTGCCCCCACCATGTATAGCCACGAAATCTTCGTGACACC # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 1 10334-11428 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFI01000013.1 Thermotoga sp. TBGT1766 Contig13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 10334 30 90.0 35 A.......G...........G......... TTAAGATGTCTATACCGGGCATTCTACAAAACAGC 10399 30 100.0 36 .............................. AATTTGAGCCCGGGGAGGAGGATTTCGAATGGCTAC 10465 30 100.0 37 .............................. GGGTAGAAGTTCCTGTTAATAGAGCTCAAGCCACACT 10532 30 100.0 35 .............................. CAACTGGACGAACTCGCCGAAAGTCATAAAATGCA 10597 30 100.0 36 .............................. TCATCCCTCTGTAGATGAAAAATCTCAGAAAGCTCA 10663 30 100.0 36 .............................. TAGGTTGGGTGGTGTAGAATTTGACCTTTACCAGCA 10729 30 100.0 36 .............................. GTTGGAAAGAGACGAAGAACTTATCAACATGATCAT 10795 30 100.0 36 .............................. TAAACGCAAGAGTCGAAAAAGGTATCAAGAAAACCA 10861 30 100.0 37 .............................. GTAGGAAGCCACAAGACCTCTTAGCTGCCCGTCGCTG 10928 30 100.0 36 .............................. GGACAATAGCTAAAAATAAAGTGGGAAATGGTTATG 10994 30 100.0 36 .............................. GTTTATATAGACTGCTATCTGTCCACGCAAGGATAT 11060 30 100.0 36 .............................. CAGAAGATTCAAAAGTCCCAAGCCGGCGTGGTATCT 11126 30 100.0 38 .............................. AGGAGGCGGTATTATGAAGTTGAGAGTGTATCGTATGT 11194 30 100.0 38 .............................. GTTGTTAACTGGGCACGAGACTATTACTACTCATACCA 11262 30 100.0 36 .............................. AAGAGATTTTGTTTCGTTTTTCTCATTGTTCTACGA 11328 30 100.0 41 .............................. AAAATTCTAGTTGGCCCAAGTTCTTTTGATGCAACAGTCGG 11399 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 17 30 99.4 37 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : CCATCTTGAACGTGGTCTCTGAGAGTGTGTCTATCATCAACCTTGTTCTCGTTGCAATCGCCGTTGTGTCGCTGATCGTTGGTGGTATCGGTATCATGAACATCATGCTCGTCTCTGTTGTTGAAAGAACCAGGGAAATAGGTATAAAGATGGCTATAGGAGCATCAAGACTCAGAATTCTTTTGGAGTTTCTTGTGGAAAGCGTTGTGATCACATTCGTTGCTGGTGCCATAGGTGTTGCTCTGGGTATCTTAGGTTCGAACACGATAGTTAACACCTTTGGCAGTCAGTACGGATTGAAAGCCGTGATAGATCCGCTCTCTGTGATTGTTGCATTTGGAGTTTCGGCAAGCGTTGGATTGTTCTTTGGGTTCTATCCCGCATACAGAGCCTCCAGACTGAGTCCAATAGAAGCCCTGAGGTACGAGTAATTTAACCGGATAGCGGAAACACAAAAACAAACATTTGCCCCGAAAGGGGCATTTTTTGTTTTGTATCAG # Right flank : TCTTCATCGAAAACACTTCTGCAAACAAGGGTGTTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 1 16429-17793 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFI01000018.1 Thermotoga sp. TBGT1766 Contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 16429 30 80.0 37 T...T.G...A.T.......G......... AGCTTGAGGAGATTTACTCATCACCTGGATATGTTTA 16496 30 100.0 36 .............................. AAACGGACGAACGGTGTCGGCCAAAGTAAGGAGGAT 16562 30 100.0 37 .............................. ATAGGCTGGACAGGTGCATAGGCCTCTTCGAGTTCGA 16629 30 100.0 37 .............................. CTGTCGAATCTTATTTTTGCTTTTCCTTGCAATACAT 16696 30 100.0 36 .............................. TATCTCAACCTGTGACTGGCCGGACGGCTAGATCAG 16762 30 100.0 39 .............................. AAACAGATGTCCCCCTAAAGCTTGGCGACATCATCACAA 16831 30 100.0 37 .............................. GTCGTGGATATCTGCATCTCTCTCCTCTGTACTACTC 16898 30 100.0 35 .............................. GCAGATTGCGGGTTTGTACATCTGCAGGATCTCGA 16963 30 100.0 36 .............................. TTACTCAAAGAGACATGCGCGAAATTATCCAAGGGT 17029 30 100.0 37 .............................. GCTATTATGGTAGTAATTATAGATCTGTGTATCAGAT 17096 30 100.0 42 .............................. TGTTCGTGAAACCCGAGTGGCTCATGGGTTGGCTACTCAACT 17168 30 100.0 35 .............................. TTGGAGAGAGCAAGAGGCAAATACTACTACATGGT 17233 30 100.0 36 .............................. AAGCAATTCCTGGAAGAGGGGGGAGATGATGCTTAA 17299 30 100.0 35 .............................. GGCGCTAATGTCTTGACAAAGTTTGTCTCCAAAGG 17364 30 100.0 36 .............................. TCGAGTTTCGTAGTATATTCCAAAAATTCTTCGCCG 17430 30 100.0 36 .............................. AGTAACCTACAAATTGAAGTAGAAGGAGGTGTTGCA 17496 30 100.0 38 .............................. ACGTTTCTTACACCTCTTCTCGAAGGTTCAGTCTTTCT 17564 30 100.0 37 .............................. TACGTTAACATAAAATCCCCCCCCTTCGATTATAAAT 17631 30 100.0 36 .............................. TAAAGAAATGGTTGGAAGGCGGTGACGAGTATGAAG 17697 30 100.0 37 .............................. TCTTGTGAACAACCTCGTTTCCGGAACACAGAACAAG 17764 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 21 30 99.0 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : TGGTCTTCATAGACACAAAGAACAGATCTGACAGATTTGAAAGGCAAAGGAAAGACTCTCCCTCGAGAGAGAATCCATTAGAAGCACAGATCGTGAAAGAGGTTGTGGAAAAGCTTCTCTCCATGGGGGTGAAGGAGGATTGGATCGGGATCATCACTCCCTACGATGATCAGGTGAATCTCATAAGAGAGTTGATCGAAGCGAAAGTAGAAGTACACAGTGTGGATGGTTTTCAGGGAAGGGAAAAAGAGGTCATCATCATCTCATTTGTGCGTTCGAACAAAAACGGTGAAATAGGGTTCCTCGAAGATCTGAGAAGACTCAACGTCTCACTCACACGGGCGAAAAGAAAACTGATAGCAACGGGAGATTCGAGCACGCTCTCTGTCCATCCAACTTACAGAAGATTTGTAGAGTTTGTGAAAAAGAAGGGAACTTACGTGATCTTTTGATATGAGAGTCTATAACAAAAACATCCCCCCACTCATGTGGGGGTTATT # Right flank : GTTTTACAAAAAAGAATATTTTTTCAAAATCAACC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 1881-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFI01000011.1 Thermotoga sp. TBGT1766 Contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 1880 30 93.3 36 .G..................G......... CCACGGAAAACCGAGTTTTAGACTTTGGTTGTCTTC 1814 30 96.7 37 ....................G......... CTCTACCACGTTGCTTGGAAGAAGCGGAAGGTACTCC 1747 30 100.0 39 .............................. CGGTTGGTACCTTGTCTGTTTCTACGATTTTGACTACGG 1678 30 100.0 36 .............................. TCTCACTTTCACTGATTCTGAAGAGAAACGGTGCGT 1612 30 100.0 36 .............................. CAACGTCTGCCTCGAACGAGATGAGATCTCCAACCA 1546 30 100.0 37 .............................. GGTTTTCACTCACATATTATCACAAATTCCCGGGTTG 1479 30 100.0 37 .............................. GAACCCTTATCTTCTTTGCCACGGTGTTCACCTCCAG 1412 30 100.0 37 .............................. GACGAGTACGTTCATGCTTTGTAGCAAGAGTACGACA 1345 30 100.0 41 .............................. CTTGAGGAACTGAAACGTGAGCGAGCAGAAGAAACAGAGGA 1274 30 100.0 36 .............................. AAAGCCATGCTCCCATTTGTGCGATTGAGTTCTGAA 1208 30 100.0 38 .............................. CCGGGGTTCAAAGATGCTGAATTAATTTTCAACCAACT 1140 30 100.0 36 .............................. GCCCATGTTACTTCATAGTTACCGCAGCGAATACTT 1074 30 96.7 36 ....................G......... GGTCCCAAGCAAGTGGTAGATATTTTGTTGGATCTC 1008 30 96.7 40 ....................G......... AAACCATAGTATTAGATATCAGGTTATTGAGGAAGAAATC 938 30 96.7 37 ....................G......... GCAAACAGGAAGGTGGTTACACAGGGCCTGGTCCTGT 871 30 96.7 36 ....................G......... GAAAGAAAGGGTCTTTGAAAAGTGAATAGGAAAATT 805 30 96.7 38 ....................G......... GATGAGAAGTTGTATCGTCATGCACGGAACAACAAAGT 737 30 96.7 37 ....................G......... CCTGGAATCATCCAACACCCGCCCTATGCCGCTGTCG 670 30 100.0 42 .............................. TTGTGCCTGTAAAGGGGACGGTAGATACTGAAAGTCCATATA 598 30 100.0 36 .............................. CATGGAGTCCCTCAACACGGGCATTCTTTGTGCTGG 532 30 100.0 36 .............................. TATGGAGGTGATATTTATGAAGTTGAAGATCACATA 466 30 100.0 37 .............................. CTTTTTTAGTTGCCGCATTAGAACCATATACATATCC 399 30 100.0 38 .............................. AAGGGTTAAAGGAGGAAAAATTTCAAACACATTTACTT 331 30 100.0 36 .............................. CACCTGAGGATATATCAGAGGAGGAAAGAGAGTTTA 265 30 100.0 36 .............................. TGCCGTACCTTTATTGTGCTGAAACATATATAGGTA 199 30 100.0 36 .............................. ACGGGAGTCTTAGTGCCGAAGAGCTTGTTGATAGGA 133 30 100.0 37 .............................. GGTTATGTAGCCTTCCTCCCCCAGGACGTGGATTCTA 66 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 28 30 98.9 37 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : CTTCGGCATGTGAAGGACCGGAGAGGACAGCGTAAGGACAACCCAGTATCTCTTCAACGATCTCAGACACTCTTTTACCTGTTTTGATCTCTATTCCCTTTGAAAGATTCAGCACCATGGAAGGCTTCACAGGTAGTCTCAGAAGATGTTCTCTTATGTATTGAACGGGAATCGCTATAACGAGAATGTCTTCTTTTTTGATTTCTTCAAGATCGTTTGTGGCTCTTACGGTGATCTTCGATTCCTCCACATAAGGGCTCGTGTGTGAAACATTTATGAGACCGACGATCTCTTTCCTTCTTGCCCAGAGAACCACTTCTTCTCCGTTTTCATGCAGTATCTGTGCAAAAACTGTCCCCCAGCTCCCTGCACCGAGAACAAAAAATCTCATCTCCATTCCTCCTCGAAGATAGAATTCCCCAAGAATTTTAACAAAAAACAAAAAGCAGGGTTTTCCCCTGCTTCGTGAAATGGTTCTCTCATATCTCACGGAATCGGGT # Right flank : CCCCTCCCCCAGTTTTAATCTTTCTTGTTCCAACCTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 2 14044-14935 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFI01000011.1 Thermotoga sp. TBGT1766 Contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 14044 30 93.3 37 ......G.............G......... TCGCAAAGAAATTCGAAACATTCGACGGAAAAATCGT 14111 30 100.0 36 .............................. TCGGTTTGTGCACTATCACTTCTCCGCTTGAGAGCG 14177 30 100.0 36 .............................. CCTGCTTAACGATATTATCTCAACAAAGCTTCTGGA 14243 30 100.0 36 .............................. CTTAGGTCGTACCAATTAACACCATCTATTTTTGCA 14309 30 100.0 36 .............................. CGATGTCGCCGCCAAGTATTTCAGGGGTTTATCGGA 14375 30 100.0 36 .............................. ATTCCCTATGCCTCTTGACATCTATAGCTATTCATG 14441 30 100.0 36 .............................. TGTTCTGTTGTGGGATCGTATTTGAACTCACTCTCT 14507 30 100.0 38 .............................. GTGGGAAGGCGTGGACGTCATATTCATCGCACATTCGC 14575 30 100.0 35 .............................. CGTGCTTGAGTCGTAGGCTTCGGGTTTGATGCCGA 14640 30 100.0 37 .............................. GCGATTTCTTTAGCGGATATAGATTTATCTCTACTTC 14707 30 100.0 37 .............................. ATGTATCAGTAGAAGGAAATTATGTAAGTCCATATGA 14774 30 100.0 37 .............................. CCTCCACCTTGGGATTGGGATACCTCAAAGGGAATAT 14841 30 100.0 35 .............................. CTGGAAGTTTCATTGTCGAAAGGTATTCTTACACC 14906 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 99.5 36 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : TTTTCTCTATGTTTTCAAGAGAAAACAATCCCATCACTTCTTTGAGATCCAATCCCGTTCCGTACAGCCCGCGGAACAATTTGAGGGTTTCCCAAACGGTGAGGTTTTCAAAAAAGGCACTTTTCTGGAGACACACACCAATTTTTCTCTTCGTTTCTCTATCTAAGACATCCTTTCTCTCACCGAAATAGTAGATCTCCCCGGAGTCTTTCTTTCTGAGACTTTCGAGTATCTCAACGGTCGTGGTTTTTCCCGCACCGTTGGGTCCAAGGAAGGAGAAAACAGTTCCACGCTCCACGGTGAAACTTATCCCGTCCACGGCCTTCACGTCACCGTAGTGTTTCTTCAGATCAACGACTTTCAAAATCTCCAGAAAAAATCTCCCCTTTGAATGTAATACTACCATACATTGAAACAAAAAAGCGCCCCTCACGGGCACTTTTGTTTAAAGGATGCATTGAAATTTGTTGAGCTTAGCGGAGATCATCGATACAAGACAA # Right flank : TCCTACCGGTAAATGGTTCTTCGTTGTTCTCATCTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA //