Array 1 1051723-1053278 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023359.1 Escherichia coli strain 1943 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1051723 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 1051784 29 100.0 32 ............................. CCTACAGTTGCAATACGCTCACCAGGGCGGCG 1051845 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 1051906 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 1051967 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 1052028 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 1052089 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 1052151 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 1052212 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 1052273 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 1052334 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 1052395 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 1052456 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 1052517 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 1052578 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 1052639 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 1052700 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 1052761 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 1052822 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 1052884 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 1052945 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 1053006 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 1053067 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 1053128 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 1053189 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1053250 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAGCTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1080242-1082771 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023359.1 Escherichia coli strain 1943 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1080242 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 1080303 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 1080364 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 1080425 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 1080486 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 1080547 29 100.0 32 ............................. ACTCTGATAGCCTGCTCAGAATCAAGGCGCAG 1080608 29 100.0 32 ............................. CGCGATAACGCTCGCCCATCACGGTTTTCAAT 1080669 29 100.0 32 ............................. CCAATATTTTTTGCATAAGATAAAGGTGATAA 1080730 29 100.0 32 ............................. TTCTGTCAGCGCAGGCATACGGCCCGCCTGTG 1080791 29 100.0 32 ............................. GCCAGGCGGGAAGCGATGGGCGGTTAACTGGT 1080852 29 100.0 32 ............................. CGGCGACGATGATCCCCTCAGGTATTGCGCAG 1080913 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 1080974 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 1081035 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 1081096 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 1081157 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 1081218 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 1081279 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 1081340 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 1081401 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 1081462 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 1081523 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 1081584 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 1081645 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 1081706 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 1081767 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 1081828 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 1081889 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 1081950 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 1082011 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 1082072 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 1082133 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 1082194 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 1082255 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 1082316 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 1082377 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 1082438 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 1082499 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 1082560 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 1082621 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 1082682 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 1082743 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //