Array 1 1056885-1055408 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043907.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1056884 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1056823 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1056761 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1056700 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1056639 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1056578 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1056517 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1056456 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1056395 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1056334 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1056273 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1056212 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1056151 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1056089 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1055986 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1055925 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1055864 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1055803 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1055742 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1055681 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1055620 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1055559 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1055498 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1055437 29 96.6 0 A............................ | A [1055410] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1074632-1073017 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043907.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1074631 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 1074570 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 1074509 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 1074448 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 1074387 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1074326 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1074265 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1074204 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1074143 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1074082 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1074021 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1073960 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1073899 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1073838 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1073777 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 1073716 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 1073655 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 1073594 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1073532 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1073471 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1073410 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1073349 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1073288 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1073227 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1073166 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1073105 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1073044 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //