Array 1 1055231-1057880 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083070.1 Klebsiella pneumoniae strain 1230_0791_KP chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1055231 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 1055292 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 1055353 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 1055414 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 1055476 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 1055537 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 1055598 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 1055659 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 1055720 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 1055781 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 1055842 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 1055903 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 1055964 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 1056025 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 1056086 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 1056147 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 1056208 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 1056269 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 1056330 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 1056391 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 1056452 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 1056513 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 1056574 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 1056635 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 1056696 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 1056757 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 1056818 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 1056879 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 1056940 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 1057001 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 1057062 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 1057123 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 1057184 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 1057245 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 1057306 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 1057367 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 1057428 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 1057489 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 1057550 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 1057611 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 1057672 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 1057733 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 1057794 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 1057852 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27938-29063 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083071.1 Klebsiella pneumoniae strain 1230_0791_KP plasmid p1-1230_0791_KP, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27938 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 27999 29 100.0 32 ............................. CGTTCTATCGGATAATACATTTTGTGATTTTA 28060 29 100.0 32 ............................. GATGGTCTTCCAAATATGGCCTATAGCGAAAC 28121 29 100.0 32 ............................. GAGTGAAAGTGATAGCAAGAGTGTAATGGCTA 28182 29 100.0 32 ............................. GCAACTATTGCCTGCATTGCTGTAGACAAATC 28243 29 100.0 32 ............................. AATCAATACGCCCTGATGCTTAAAAATGGCCG 28304 29 100.0 32 ............................. AGCAACGTTTCCGGATTATATGGCTGGAACGT 28365 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 28426 29 100.0 32 ............................. TGGTGTTGTCCACGGTTACCCGCTGGCTGGAA 28487 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 28548 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 28609 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 28670 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 28731 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 28792 29 93.1 32 ............CA............... TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 28853 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 28914 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 28975 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 29036 28 82.8 0 ............CAC.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 96.6 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTTTTTAAGTGATCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //