Array 1 500164-500861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUK010000002.1 Listeria cossartiae subsp. cossartiae strain FSL L7-1434 NODE_2_length_505744_cov_60.372658, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 500164 36 100.0 30 .................................... ATATGGATTCTGACGATGCTATATATTTGA 500230 36 100.0 30 .................................... GACTTCTCCCGATGATTGGACTGCTCCCTT 500296 36 100.0 30 .................................... CTATACTTCAAAGTACACCGCGCTGACGCA 500362 36 100.0 30 .................................... AAATAATTATTAAACGGAGGTAATAAATTA 500428 36 100.0 31 .................................... CACTAATCATTTTTAACAATCCGGTCATTGG 500495 36 100.0 30 .................................... TGGCGATTTAGTAAAAAGGCTCTCGAAGAT 500561 36 100.0 30 .................................... CCACATAATGGACTGGCGCCATTTTACCTT 500627 36 100.0 30 .................................... TTATGCAATGATGCAGAACATCAAAATACT T [500638] 500694 36 100.0 30 .................................... TAGTTTAGATAATGCCGCTTGTACATTTGA 500760 36 100.0 30 .................................... TGCGAAAACAGCTGAAATTAAAGACGTAAC 500826 36 77.8 0 .........................A.C..TGTTTA | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 98.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : ATAAGTTAACTGCGACAATTAGCGAGTTAATAGGTTACGAGCTATTGGAGCATGAACTAGATTTAGAAGAAGATGAAATCACGGTTATTGAATTATTTAAAGCTTTAGGAATAAAAATAGAAACTAAAAGTGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTGCTAGTTTTTATAAATGTATGTGCTTATCTTACAAAGGAAGAGTTGGTAGAATTAAGAAGGTATATTTCTTTGTATCAAGTGAAAGTTTTGTTTATTGAACCTAGAAAAACAGACGGTTTTTCGCAGGTTATTCTGGATTCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGACCGGACGTTCTTTGAAAATAAAATATAGTTTAATTAATTTATTAAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTCGGAGGATAGAAAAAATTCTACGAGG # Right flank : AAGAAACAAAAGTTTTTCATAAACCAGTTCTTAGTAGATTTTAAAAAGGAGATCACCATCATGAAAAAAACCTCAATCATTTTTATTTTTTGCGCACTCCTCCTCCTAACAGCGTGCTCAACCACCGAAAAACAAACACAAACCACCGAAGCAACAGGCACGATAGAACAAGTAGAAACAGAATCTATTTTAATCAAAAATTTCAAAGAAAAAAACAACCCAGAATCCAGCATACGTTTCCAAATCACAGACAAATACTACGACGAAACAGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAACGTAAAAATCATTTTAACCAAAAGCTTCCCAATCCAAGAAACCTTTCCAGCCCAAATAGACCCAAAATACGTCCAAAAAATCATCGTGCTAAACAAATAAAACTCTCTCATCCGCAGAGAGTTTTTTCTTTCCTCAAAAAAATAAAATCAAAAACCTTGCCTTGGTGTGAACTCCAAGGTTTATAATTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 242287-243033 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUK010000003.1 Listeria cossartiae subsp. cossartiae strain FSL L7-1434 NODE_3_length_445881_cov_50.759796, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 242287 29 100.0 35 ............................. AACACAAACTTACCACAGTGCTGGCATAAGCCACC 242351 29 100.0 37 ............................. TTTGAAATCAAAACTAGGTCGAGTAGCGTGCAAACAG 242417 29 100.0 36 ............................. CTAGAAGGAGCGAAAATGGAAGTTAGAACCTCTAAA 242482 29 100.0 36 ............................. GTAGCAAAAGGCAAAAAAGTAGATATGGTCGACTTT 242547 29 100.0 36 ............................. ATTGACCGAACTTGAAAAATTGACTCAAGATTATGC 242612 29 96.6 36 ..........T.................. GAAGAAACAACTAGAAAACACAGCTAAGAGCATCGC 242677 29 100.0 36 ............................. GAGTATTGTTCGCTCAGTTCGTTGAATTGTTTTTCA 242742 29 100.0 39 ............................. AACAAAGATACGCATTTTGTTCGATGCAATGTAAGTGCG 242810 29 100.0 34 ............................. ACGGATTAATGACCGCGGTGTATTCATGGATGGG 242873 29 100.0 37 ............................. ACTAATTTCATCAAATCAGATAATATTTTTATCAAAA 242939 29 96.6 37 ..............A.............. CAACGAATTCCGTTTTTTTAGAATGTTGCTGCCGCCA 243005 29 86.2 0 .......T.......CA......A..... | ========== ====== ====== ====== ============================= ======================================= ================== 12 29 98.3 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTACTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTGCAAAGCTCCAATATCAAAGAAGTCATCACATCCGACTCCATTGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATTTCTATCGGCCGTATTTTAGGACGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGATTTAATGAAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGCGTTTGGTTATCTGTCGACCTTTGATAGCGTGAAAAATGCTGGGGATCGACAGAAAGGTGAGAGTGATTGGCGTGGAGGGAGTTTGGTGGTTTTTTCTTTTGAAAATCATGTAGAGAAGGGTGGGTTTTCGTTGGTTTTTAGTTGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTTCAGATACAACTCCATCCTCGTCTATCAAGAATAAAAAGAGTGACTGCGATTTCAGCAGTCACTCTTCTTTTCAATCATTAAACTCTTTCAAAACGTCCTCTTTAATTTCAGTATAATTTTTTACTTCCTCTTTCTCTTCAGAAATAAAATTATATACTTCCACTTCTCCTAAATTTTCAAAATCCGAAAGAGTAGCTTCCGTTTCTTTCAAATCTTCATTAAATTTTCCGTAGCCCATGCTAATTATCGAACTTAGTTTTTCACTATCATGTCCACCGCGCAAAAATAACGTATACTCTTGCTCTTTTTCAAGAGCGATATAGTTTTCAATGGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAAACATCAATTTTGTCGCCTTTTTTGAAGGTGCCTTTATAAGTTTCTAAAACTTCTACTTCACTTATAGTGCTACTATACTCCATTTTTTCTTTATCATAATCGCCAATTTTCTTGTTTTTCAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 258582-259653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUK010000003.1 Listeria cossartiae subsp. cossartiae strain FSL L7-1434 NODE_3_length_445881_cov_50.759796, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 258582 29 100.0 35 ............................. ATTCAAGACTTTTCAACTATGACAGTAGCAGAATT 258646 29 100.0 34 ............................. CATGTACTTTAATCGGCATCAAATCACCTCTATT 258709 29 100.0 36 ............................. AGTGTCTTATAGTAAGCAATTCTACTGAATGTATAA 258774 29 100.0 37 ............................. TTCAATCGAAACGCTTGGCATTGCGGCGATGGCGGAA 258840 29 100.0 38 ............................. TTTTGAGCGAAAGGGTGAATAAAAATGACAGCAGAAAC 258907 29 100.0 36 ............................. TCTTGAGCGTCATCATCCTGTGCGCCAAATTTGTGG 258972 29 100.0 34 ............................. AAAATAAAAGGCTTAGCTTCCTTTGTCTCAATTC 259035 29 100.0 38 ............................. CCTTTTATCTGTTATAGCCATTTCGCTACCTCGTCCCA 259102 29 100.0 36 ............................. ACTACTGTTCCTGCGCCTCCGCCGACTATTCCCCCA 259167 29 100.0 36 ............................. ACTTCATTTGCGATCAGGCTTACTTGTTCATTCACA 259232 29 100.0 37 ............................. AAATTAAATACAGTATTGGTTCGACTTGGATTCCAAA 259298 29 100.0 34 ............................. AAAAAAGAGTACCTGGGAAGCGGCAACTTCACAA 259361 29 100.0 39 ............................. ATGTTAAGTATTTGGTTCAAGATTTTAGAAGGGGAATTT 259429 29 100.0 36 ............................. CTAAACATAATTCCATCATGTTATTACACGCTCCTT 259494 29 100.0 37 ............................. AACGCTAAGTTTACATCTGTACAAAACATCGGTAGTT 259560 29 100.0 35 ............................. GTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 259624 29 82.8 0 ...............C.C....CA....C | C [259646] ========== ====== ====== ====== ============================= ======================================= ================== 17 29 99.0 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : AAATTAGTAAAGCATTTGATGAGTGATAAAGAATACGAAGCATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGGCAACAAAGGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCTGAAGGGATAAGTTATGATTTTTATGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCG # Right flank : CTTCCTCTCAACATTCAAACTCCAAAAATAAAAAAGACCTGGACCCCAATCCAAGTCTTTTCCCATAACACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACTAAAATTCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCTGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATCCCTGCCCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //