Array 1 26368-26515 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNQV01000054.1 Aquitalea pelogenes strain CCM 7557 contig_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26368 28 100.0 32 ............................ ATTGCTGTCGCTGAGTTTGAACTGCTTTTCAG 26428 28 100.0 32 ............................ TTCATGGCCGCGAAGGCCGGGGCAGTTCTGGT 26488 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGGACAGGCAGCTCAGAAA # Left flank : ACTGGGCCAGCGGCTTTGCCGATTACGCGCTGATTGGCAACATCCGCCCGGTACCCGCCACCACCCAGGTCATTCGCGTACAGCGGCGGCAAGCCAAAAGCAACCCGGCCCGCGAACGCGCCCGACTGATGCGCCGCAAAAACATGGATAGCACTGAAGCATACCGCCTTATCCCAGACAGCAAGGCACGACGCCTGTCCCTGCCCTACATCACCCTGGACAGCAGCAGTACCGGCCAACGCTTCTTGCTGTTTATCGACCAGCACGCAGTCACGCAAGCGGTGAGCGGTGAGTTCAACAGCTACGGCCTGAGCAACAGCGCCACCCTGCCCAGCTGGTGACACGAGGGGTTGCTGCCGGAGAACGGTGGCAACCCTTTTTTTGCGCGGACCCATGATCTTTAAAAATCAATCAGTTACAACACAGCAGCAAAGAAAGGTTTTCGAAGCCAAACTGGCCCACAGCCAGACTGGCCAAGCAAACCAGCGTAAAGTGGTCTA # Right flank : AGACGGGCAAGAAGTAGTTGAGCCGCCAAGTGGTTCACTGCCGGACA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 91145-90757 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNQV01000016.1 Aquitalea pelogenes strain CCM 7557 contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 91144 28 100.0 32 ............................ CGAAGCGCAAGGTCGTGCTGGCCTCGCTGACC 91084 28 100.0 32 ............................ AGTCTGCATACCAACAACTTTGCTTCGACAGT 91024 28 100.0 32 ............................ ACTTCCGATAGCGTCACGCTCAGTGCCGCTAC 90964 28 100.0 32 ............................ AGCGGTAATGCCAATTTGCGAGGCAACGGGAA 90904 28 100.0 32 ............................ GCCCCGCAGCCGAAGGGAGGGGAGTGATGAGC 90844 28 96.4 32 ............T............... ATCCGGCAGTTTTCAAGACTGCTGCAATAAAC 90784 27 85.7 0 A..........C.T.........-.... | A [90764] ========== ====== ====== ====== ============================ ================================ ================== 7 28 97.4 32 GTTCACTGCCGGACAGGCAGCTCAGAAA # Left flank : AATGTTCCGTGGCCGTGGCCTGATCCAGGTCAC # Right flank : GGCTGACGCGTCTACTCTGCGGACCATTCGGTCAGTTCCCGCACTCCCCTGTCATCCCTAGAATCCGCCGCTAGTGCTCAACACACTTCAAACAGCGGCTATCGCATCCGAAAGTCTTGAAAGGCGGCGTTCAACGAATCAAACAGGAGCTCCGCACCGTGACAGATCAGAACACCCCCCAACACCCACCTCCCCTTTGTTTTTACTACCACGGCAAACCACTGCATGTGCAACACCACCAAGGCGAATGGTGGCTGCATAGCGGCGATGTGCTGGGCGTCACTGGCCGTCGGCTGGGAAACCGCCTGCAGCAATTACTGGCGGCGGACCCAAGCCGCAAAAACACCGCAGTTACTGAAGACATCAAGCAATACTGGCCTGTGACTGCCCTGCTGCGCGCCTTGCGTCGCAGTGGCAAGCCGCTGGCGCGGCAGTTGCGTGACTGGTTAAACCGAGCGCTGCTACCGGCACTGGAGCAGCTGCCGCCCACTGCTCCGCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //