Array 1 58991-59750 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWZQ01000008.1 Lactiplantibacillus garii strain FI11369 NODE_8_length_78137_cov_3.182259, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 58991 28 100.0 33 ............................ CAATTACAATTTACTCACCCGGACGAACTTGCT 59052 28 100.0 33 ............................ TTGGCAGGTATGACCTGAATGCTTCGCCATTAT 59113 28 100.0 33 ............................ TAAACGTTAGCTAAATTGAACGGCGTCCGGGTC 59174 28 96.4 33 .........A.................. CTGTTAAGAGCCACAAGCCTTTTATGCAAGATG 59235 28 100.0 33 ............................ CCAGTATGACAAATTGGAAAATTATTTCAACGT 59296 28 100.0 33 ............................ CGGCAGCTCACAAAGCAGCGGTCAACCAAGCCA 59357 28 100.0 33 ............................ CTACGGAGCCACACTTCTTGGCAACCTCCTGAA 59418 28 100.0 33 ............................ TCGAGGTGCCAGTTTTTTGGTGGTAAAGCCAGT 59479 28 96.4 33 ...........................T TGATTCCCTGATCGTAGCCATCGCTAAGTACCT 59540 28 100.0 33 ............................ TTGGATTAAGACCTACAAAACTGACGGCGTTTC 59601 28 100.0 33 ............................ TACCGGCTGCAGTCGAGATTTTACAAAATCCTA 59662 28 100.0 33 ............................ TTTCCGGTGAACTACTTCATATTCATAAAGGTT 59723 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.2 33 GTGTTCCCCGTGTATACGGGGGTGATCC # Left flank : GCCTGGACGGGCAAACTTACCGGCTTGCATTATCGACTAATACGGGGTACTTTAATTGGCAGGTTCGGGTTGGCGACAGCGTTTCACCGCTAAACTTATTAGGAACCCTGAGTCAAAAACTACCCACGAATGCGGTAGTGACGTGTGAACGTTTAAGTACCAAGCAGCGTACCCGTCTCAACCAACCGGCCTACGCCGTCAACTATTAGTGACTAAATTTACAAATTCTGACCACCACCTAACTGAATCCATTAGGTGGTGGTTTTTTCGTACTCTTCAGATCTTTAACGGTTTAATTTGGACACCGCATTGCCGTTCGACATCGAATTAATGTGGCCTGGTTTTTTAAAGTCAGTGTTTTTTCAGATGAATTTGTAACCGCGCTCACCCATCATAGTACACAGTCTTTCTTCTGATTTCCTAGTAAATCTAGTTGTCAAACTAATAAAAAACGGTAAAATTAGTAAATAGGAATGCCGATTTAACGGTGTTCTGTTAGT # Right flank : TCCATCACGGCCATTCCAAGTTGAAGACCGAGGCGTAAGGACTGTGACATAATCAGCCTCTGTATAAGCGAATGAATTAAAAAGACAAGAATGGTATTTTTAGAGTTTTTTATAAAAAATAAGAGCCTCGACAAACACTGATTTGTCAAAGCTCTTATTTTTATAATCGTTATGTTAAGGAGAGTACAGGATTTGAACCTGCGCGCCGGTATTAGCCGGTTCGCCGGATTTCGAGTCCGGTGCATTACCACTCTGCCAACTCTCCATGTGGTACTTGAATAGTATAGCATAATTTGTGGTAAGAACAAATAAATATTCAGAAAAAGCATTGTTTATTTACTATTTCTATCAGAAAAGTAATTATAGCAATGTCCTCAGCTGCACTGTCGGGAAATTTAGATAGCATCAATACCTAAACAGAGCTAATGCCAATAGAAACCGGTTAAATTTAAGCGACAATAATTTAGAATTTTTTGTAATCGTATTCCATTTTCTATCAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 498-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWZQ01000133.1 Lactiplantibacillus garii strain FI11369 NODE_133_length_506_cov_0.245383, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 497 36 100.0 30 .................................... TCGGCGTCCTCCTGACCGATCCCAATGATT 431 36 100.0 30 .................................... AATAACTGATAGCAATGTTCTTTCAGCACT 365 36 100.0 30 .................................... CGGAAGTGTCCCACAGCAACTTTCGAAGTA 299 36 100.0 30 .................................... GCTGCTTTCGTCATAGCGGACTTGCGTTGT 233 36 100.0 30 .................................... TAGCTCTTCGTATTCCCAATTTACTCGGAT 167 36 100.0 30 .................................... CGGTAATTCCTAAGAAGGTAGCTGACTGGA 101 36 100.0 30 .................................... TCATAGGGATAAAAAGCAGACGACTTGGAC 35 35 94.4 0 ..........T........................- | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.3 30 GTCTTGAATAGTAGTCATATTAATAAGGATTAGGAC # Left flank : ATGATCGA # Right flank : A # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATTAATAAGGATTAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 9-704 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWZQ01000125.1 Lactiplantibacillus garii strain FI11369 NODE_125_length_713_cov_0.616041, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 .................................... GCACAGCATTAAGGCGTCGCAGGACGTCGC 75 36 100.0 30 .................................... CCAGTTAACGTTTCTCGCACGATTGGAACC 141 36 100.0 30 .................................... CGCCACCTTTTTTGGGTCGTACATGCGGAT 207 36 100.0 30 .................................... GTCACCCATCGACGTGCTATAATTGCATCG 273 36 100.0 30 .................................... TCTCAACCTCGTGAAGGCTTTCGACTAACT 339 36 100.0 30 .................................... GGCGAACGCCGCCGCAAAGGTGACGTCGAA 405 36 100.0 30 .................................... AATTAGGTCATATCCTTGATAGAACGCTTC 471 36 100.0 30 .................................... AAGGCCGTGGGCTACTCGTTGACCGGCTCC 537 36 100.0 30 .................................... AACCGACGCCACCGCGATACTTTGGCCGCT 603 36 100.0 30 .................................... AAGGCCGTTTAAAAGAGTCACGCTATTTGG 669 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTCCTAATCCTTATTAATATGACTACTATTCAAGAC # Left flank : TTTTGACCG # Right flank : ACTACTGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTAATCCTTATTAATATGACTACTATTCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [8.3-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 285-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWZQ01000148.1 Lactiplantibacillus garii strain FI11369 NODE_148_length_302_cov_1.422857, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 284 37 100.0 29 ..................................... ACTTTGGTCCCTAATCAGTGCCTATTACG 218 37 100.0 29 ..................................... TGAAATCCGCCAACGCTGTTCGGTTGAAG 152 37 100.0 29 ..................................... GATTCATCATATTTCCAAGTTTTTAACTT 86 37 97.3 0 C.................................... | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 99.3 29 GGTCCTAATCCTTATTAATATGACTACTATTCAAGAC # Left flank : CATCGCTACCATCAAAC # Right flank : CATGGTGAACACTGGGCAATTAAAGACGACGGTCCTAATCCTTATTAATA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCTAATCCTTATTAATATGACTACTATTCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //