Array 1 36905-36446 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCVC010000018.1 Lactiplantibacillus argentoratensis strain C7-83 C7-83_1.clean_(paired)_contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 36904 28 100.0 33 ............................ CCGTTTGGTGCGAGCTTTCCGATTCTGCTGACT 36843 28 100.0 33 ............................ TACATGGTATCAACCGTGTCAACAATCGTATTA 36782 28 100.0 33 ............................ CCGTTAGTTACTTTACTGCAAGCCGGAACGGTT 36721 28 100.0 33 ............................ CATCAAAAACGACGCTTTCAAGTTTACCGCCGG 36660 28 100.0 34 ............................ CTAGCCACTGACAATCCGCAATTAGGTAATAATG 36598 28 100.0 33 ............................ TCAACAATTGATACACTCAGTCAAAAGGTTACC 36537 28 100.0 33 ............................ TCCACCAGTTACAGAGGAAGACATACCTTTGAT 36476 28 100.0 0 ............................ | ATG [36452] ========== ====== ====== ====== ============================ ================================== ================== 8 28 100.0 33 GTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : GTGACAATTGAACAACAAAAGCAATGGCTGGCAGACCGAGCAATCGGGGCTGGCTTTGAGCTGGTTGGTCATCGTGAGACGGAATCTGACAAGATTCACGAATTCGCATTTGACGTGGTGAGTCATGATTGGCCTATGCTTCACCGAGCTAAAGGGTACGGTGTTCGTTTAAGTCGTGTGACATTTGAAGGGCTCCTATGTGTCAAGGACCTACCGACCTTCAAGCAAACCTTGACGAGAGGAATCGGCCGTGAAAAGGCATTTGGTATGGGGCTAATGACAGTCATTCCTGAAGTACAGTGATTGACTTTCATCGGTGTTTACTGGATTGGTGGGCCCGGAACCAGTGCTGGCGAACCAGGTATGCGCTAGTTTTTATCGAGCGTATTAGTCAGGGGTTAGTTTTACAGTTCGTCCGTGCTTGTTATCCTCGAAGTCAAGCTAACTTATTTTTAGTGTTTGGTATTTTCAGAAAGGCTTGGGGACGGGATCTGTCAAGT # Right flank : TTGGCTTGAATGCAGCAGTGACCCGTACAACAAAAGAGCGAGCCTTCGATTGAAGGCTCGCTTTGTGTTCTCAATTATTCAGTGTGGTGTTTCCGAACTGGACTGACCCAGGTGCCGCTGCCGTAACCCAGGATGGTTTTAACGGCTGGAACCAACGTTGTGACCAGGGCGAGGGCGTTAACCTGCCAATAGATCAGCATATAGAGTGGCATGAAAATCAGATATTTAAACTTGCGGCCACGGTCGTCAACGATCAATGCGGACAATAGCTGCAAGACGCCGGCGAACATTTCGAAGGTCACGAAGATGAAGGCCATGCAGAACATATGATAGACGCGCTCGTAATTGCCGGTAAAGAAGAAGGTGATGAGCGAGATCAGGAAGATCAGCGTTGAGACAAAGAAGAATAGGGACCAGATGATGCTCAGCGTTTGATCAGTAATAAAAGCCCATTGCTTCAAATACTTGCCGGGATGACTGGCAACTCGTTTAAAGTTGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 45223-45678 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCVC010000018.1 Lactiplantibacillus argentoratensis strain C7-83 C7-83_1.clean_(paired)_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45223 29 96.6 32 ............................T AAATTTCTAATTTGTATTCGTACGAACGAAAA 45284 29 100.0 32 ............................. ATAGAATGTTTGGACTCCATTTACTGCAAGTA 45345 29 100.0 32 ............................. AATCAGAACCGGTTAAACCGGCTGTAAAGGGG 45406 29 96.6 32 ............................T GAAACCTCTGTTACTGTGATCAATGGTTATGG 45467 29 100.0 32 ............................. ACTTGCCGCACGGCATTTTCATACTGACGAGC 45528 29 96.6 32 ..............C.............. GGTTTCAAAGCCGCTAAAGACACTAAGTCTGG 45589 29 93.1 32 ..........................T.T AAGCAGATTGCCACGTTACAAGAAACCATCAA 45650 29 86.2 0 ...............A.......A.C..A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.1 32 CTATTCCCCGTGTATGCGGGGGTGATCCC # Left flank : CGAAAAATAATAATTGTACCGTCTAATCTCAGTTCACTAAAATTACTTTCATTGGATATTTACTTATCTTAAGTTTCTGCGGCCTGTAAAACAATTCAAAAATTAGCTATATCTTATACTAACATTTAAATTCTAGAGGTTCAGCTTCGGCTTGATAAAACGTCGCTATCTTTGTCTCAATTATTATGTGAGCAAGAATCGTTGAAACAATAAATAATTTGCTTTACAGATGAGATATGCCTGTTGCAAACCTAGTACTTGGTGTTCACCGCATAGTTATTAATCATAAAGTTATCTCCTAGCATTTTGTATCACATAATTTGTGCAACCTAATAATCTCAATCAATACTCACAACAAGTACAAATTCAATACCATGAAGGCCGCCTTGCTATAAGGCCCCCTTGCTTGTTTCGTCATATTAATAGTGTTTATTAAGCAAGTTGACTTAAATCTCTCAAGTACTAATTTGATATTGCTGCTATAATAGGCTTTGTTTAGT # Right flank : AAACAAAGCCATAGATAAAACAACAAATCACTTTCGAACAACTGCGACTTCACAAATATAAAAGTGCATATTTTACACATCAGCACTACAAAGTCTCACTAAACGTTTAAAGAACCGTCGTTAATCAACTTATATGTTAACTCCAGTGTTGCCTTAGCATCTGAAAGCGCATTATGTGGCCTTAAGTTCACAATTTGATAATCTGCTAATACCGTTGACAGGCGATAATTATCCAAGAAGACATTTGTGCGTTTTACAATGGGCATGAGATCTGTTGTGTGATTGGTCAGTCTTTCTATGTCATTTTCTATAAAAGCTTGCTTCAAGAACATTTCGTCAAAATGGAAATTATAGCCTACGATTACACTATTACCAATAAAGACCTTCATTTCACTCAACGCCATAGCTATCGAAACGCCTTGCTCATTAAGCATGTCACGTGTGATTCCAGTAAGCGCAACAATTTTTTGGGACAACGGTCGATCAATTTTTATTAGTCG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 47951-48527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCVC010000018.1 Lactiplantibacillus argentoratensis strain C7-83 C7-83_1.clean_(paired)_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47951 28 100.0 33 ............................ CAACTATACCAGATTTTAATTATTTCCCGTCTT 48012 28 100.0 33 ............................ TATCAGTAATCATGTCAGCCGTGGCGTCTAATA 48073 28 100.0 33 ............................ TCTTCTTTTGCCAAAGGTTTATCATCAACAAGT 48134 28 100.0 33 ............................ TTGGAAACCGCCCCACCGACAAGCGCGCCCCCG 48195 28 100.0 33 ............................ CGGCATGTAAAGCTTCGGTTTAATAACATCAAA 48256 28 100.0 33 ............................ TACGACTTAACTTATGATGATTCAACATGTCAT 48317 28 100.0 33 ............................ CCTTCGGCTTGTCACTCTCTAACGTGTCACCGT 48378 28 100.0 33 ............................ CATTAATTCCATAAGCCGCCCTGGTGCTTTAAA 48439 28 100.0 33 ............................ TGGCGCAGTTGCCGGTTTGATTGTTAGTGCGGC 48500 27 89.3 0 ...............G.-A......... | T [48525] ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.9 33 CTATTCCCCGTACATACGGGGGTGATCC # Left flank : TAATAATTGCTGCGGGTACAAAAACCACGCCACGAGCATCACTGACTCGAATCGCACTATCTTGGCGATCGAGTTTGGCATGTTCCAAGTATAAAAATGTTAATCGATCATGAATTCGACTCAATTCTGACAATTCTGGCTTTTTTGCTCCAGATTTTTTCATTAGTACTGCACCTCCAAAATATCTGCATCAAGTTCACACAGTTAACTCTCAAAAAACAATTTTTCCATGAGTAAAGAACATAATGCGCTTTTAAATATAGGATAAGTATTGGTCAAACGCGAAAGAATACGCTTGCATCTTGCTGTAACCCAGATGCTCAAAAAAACTCAGAGTATCATATTTCATCAAAATCAAAATTATCGCGCCTTCATAATTATAATATCATAATTCATTTGCCATAAAAAACACATATATGTATACTTATATGAGATACAAAGTTAACTGAAAATTGCTCATCAGCTCTTTCATATTATTGATATATCACCATTTCTTTAGT # Right flank : CGCCTATTTGTTCGACGGGAATTTCTTCCCCGCTACAGGAAACCCATATTTTAATAAAGATTCAAGTCATCCCTAATTATACTGTTGAACATGAATCCAGTTGGATCCGGTTAGCCATTCGCAACATATATAGAAGAAGGTGAAAAAAGTGTTTGAATTACTTGAGGCTATTATTGACATCATCAAACATTTTGGAATGGCACTTGTATTAGGATTTTTAGCATATGCTCTAATTTATATAATTATCGGTGTATTTACGATGAATTAGATACGCTACTTTCCATAACATGAAATGGAATCTTCAGTTACTCTTTGGCGTACTTTCTACTTACTAATGCTTAATTTAATCCTTTATCTTAATCAAAAAGTATTGACGAAATATAGACATATGCAAAATAATTTCAAACCAGTCAAGATCAAACCAACTTGCTGGCTATATTTTCTAGTCGACCCATTTCGTTTCACATTTTAATTCAGCCTGATTATTGCAATATTTTCTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTACATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 50938-52067 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCVC010000018.1 Lactiplantibacillus argentoratensis strain C7-83 C7-83_1.clean_(paired)_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 50938 28 100.0 33 ............................ CGGCCTTGCAAGGTCTGCAACGACTAATTACAT 50999 28 100.0 33 ............................ CAGTTTTACAAATTTACCAGCCGCCGTCGAAGA 51060 28 100.0 33 ............................ TTATTCACCCTCATCGATATCAGGTTCGGCATT 51121 28 100.0 33 ............................ TACTATCAACTGAAAGACCTGTACCATCATGTA 51182 28 100.0 33 ............................ CTAATATCAAAATCTAAGTTATGATAAAATAAT 51243 28 100.0 34 ............................ CAAGAAGACTTATTTACAATTTTTACAAGCCTTA 51305 28 96.4 33 ......................C..... TAAGCCGTAAAAATATATATCGTTATGATTGGA 51366 28 100.0 33 ............................ TAGCAGTTATCAACCGTTAAACCGGCCGATCAG 51427 28 100.0 34 ............................ CATCAGGAACCGGCTTATTAGTAGCTTTGATTTG 51489 28 100.0 34 ............................ CAATGAAGCAGACAAATTCTTAAACGATGTATTG 51551 28 100.0 33 ............................ TAATACGGGTAAAGGCGCAACCGTTGATCCGCG 51612 28 100.0 33 ............................ TGTCTCGCCCCTCGTATAGAAGCAGTGATGCGT 51673 28 100.0 33 ............................ CCTGCCAGGGAGATAATTGCAGTTAGTAGGCTT 51734 28 100.0 33 ............................ TGGTCAATTAACGGGTATCGCTGAACAGGTTAA 51795 28 100.0 33 ............................ TCATTATCAACATCTCCATCTTTCTTCACATAC 51856 28 100.0 33 ............................ TGGTCCCGTCAGCGCTAGTCGTCTCATCTTCGT 51917 28 96.4 33 .C.......................... TAAAGTGTTGAAAAAATCAAGAACATTCTTGTT 51978 28 100.0 34 ............................ CGACCTTGATAAATGGGTGCGCTATTCCTTGGAG 52040 28 92.9 0 .......................A...T | ========== ====== ====== ====== ============================ ================================== ================== 19 28 99.2 33 CTGTTCCCCGTGTATACGGGGGTGATCC # Left flank : GAAAATCGGCGCCCAATCGACCTTAAAAAACTAATCAAGAAACGTGGGACATTTGCTTGGGAATGGATGTACTCAAAATCCTACTACCACACGGCCGACATGATTAGTCAGCACGATATCTTAGAAACCATTGCGGGTTTGCTTGACCGTGGCTTGCTTCAAAGCACGCTATCACAGACACTACGGCCAATCAACGCGCTTAACTTGCGGCAGGCCCATCAACTTATTGAGCAGCATCATATGATTAGCAAGGTAGTTATTGATGGATGGGAATGAGTTGACGTGTATTACGGCTCACGCGATAATGATCAACTTTAACTCGCCAAATACGCTGTCCTGTTCTGTCTTTTGATGCTTACAACTGATGTTGCACTCCAATGGAGAAATTATTGATATTCTTGGAGCCATACCTTATAGTCAAAGTAGTGGCGATTTTGCAAGTTAACTAAAATTCCTTGTTTTGTTATTTTTGATTGTTGATTTACCGGGATTTATTTAGT # Right flank : TAGGTCATTAAACTTTCCAGTCCGAACCAACGTCAAACCTATGGTATCAGATGGTATCAGACTCGCTTATTTTAGCATCGCCCCCCGCTAAACTACCAAACTTTCTTTTTCAGTTTCCAAAATATTAGTGCTATGATGATAGCATCAATTTGACTAAAACACTTAATCAGAAAGGACTTTAAAATTGGCATTTAAAACACCACTGGCTGATCAGATGCGCCCGCAATCATTGGAACAGATGGTCGGACAACAGGATCTGTTGAAGGCAGGCCAGCCACTACGCCAGATTATTGATCAACATGTTAATATTCCACTCATTCTGTGGGGGCCGCCGGGAACTGGCAAAACTAGTTTGGCGCAGATTATTGCGAGTCAAGACGATTATCCATTCGTGGCTTTTAATGCTTCGACCGAAAATAAGGCACAGCTGACGAAAGCCATCGCACAATACCCAGAGCAATCGTTTGTTCTATTAATTGACGAAATTCACCGAATGACTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //