Array 1 1026-2553 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTYP01000033.1 Pseudomonas aeruginosa strain AZPAE14402 AZPAE14402_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1026 28 100.0 32 ............................ TGGGTGGCCGACATCGTTGCGTCGAACTCGTA 1086 28 100.0 32 ............................ GTCGAGGGCGGCCAGTTTCAGACCATGCGCGA 1146 28 100.0 32 ............................ TACTGGGGCTGTGGGAAGAGATCAAGGCAGGT 1206 28 100.0 32 ............................ AGTTCAATCTGCCGGCGACAACCGGAGTAGCG 1266 28 100.0 32 ............................ AGCTCGCCTCGTCCATCCGCGTGCGAGCCAGT 1326 28 100.0 32 ............................ TGGCAGAGGGCGGCGCCGCTTTCCGTGCGCGC 1386 28 100.0 32 ............................ TTCGCGGGTGACCTTCACGGCGAGGTTCTGGT 1446 28 100.0 32 ............................ TGCGCCAGCCAGTGGTCAAGGGCCGCGTCGCC 1506 28 100.0 33 ............................ GAGCAGCTTCCGCTTGCGCTCGGCATCCTGGAT 1567 28 100.0 32 ............................ GTACTGCTCGACCAGGTCGGCCTGGGTGCAAT 1627 28 100.0 32 ............................ AGGAACAGGTAATCGAACGGCTCGGCAGTGGT 1687 28 100.0 32 ............................ TGGGCGAGGTCGCCCTGGGCTTCGATGATCGG 1747 28 100.0 32 ............................ AATGACCCAGGCAAACAACGGAAAGATCACCA 1807 28 100.0 32 ............................ GGTGCGTGCGGCGGCGTTCCTCGCTCAGGTCG 1867 28 100.0 32 ............................ TTCACGGCGAGGGTCTGGTAGATCGCCTGCCC 1927 28 100.0 31 ............................ CGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 1986 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 2046 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 2106 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 2166 28 100.0 32 ............................ AAGCAGGTGGGCATGTTCACCGCGCCGCAGCC 2226 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 2286 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 2346 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 2406 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 2466 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 2526 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12420-11079 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTYP01000033.1 Pseudomonas aeruginosa strain AZPAE14402 AZPAE14402_contig_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12419 28 100.0 32 ............................ TGCGCATCCGCGCTGACCTTCAGCAGGGTGCG 12359 28 100.0 32 ............................ ATTGGTTCGCAGGCAGCACCACGCCAGGAGCA 12299 28 100.0 32 ............................ TCCATCGCGATGCAGGAAGCGACCGGCAAGGC 12239 28 100.0 32 ............................ TGGGCAAGAGCGCCGGCGCCATCGGTGCCCTG 12179 28 100.0 32 ............................ ACATAGCCCCCGGTAAACCACCCATCCGCATA 12119 28 100.0 32 ............................ AGGAGCAACGGGACCGCCTGCTCGGCACGTCT 12059 28 100.0 32 ............................ TATGTCCACCTTGGCGTCTTCATCGACGGGGT 11999 28 100.0 32 ............................ TGGACGGCCGCAAGACAGTCACGCGGCGAGTG 11939 28 100.0 32 ............................ TTGTCCGTGCGCGGCGCCTTGGGCAGAGTGAA 11879 28 100.0 32 ............................ AAGACGAGTACCTGAAAGACACCACCGGCAAC 11819 28 100.0 32 ............................ ACGATGGCCGGGTGATCGGTATCCCTGATCAC 11759 28 100.0 32 ............................ TGTATGACGACAGCGATTCGGAACGCTGCCGC 11699 28 100.0 32 ............................ TGCAATGGGGCTGCTCGTTCTAACCGCACGGT 11639 28 100.0 32 ............................ TGGCCGTCCCAGGCCTCTTGCGGTCTAGCCTC 11579 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 11519 28 100.0 32 ............................ AGCTTCGGCACCCTGATGCGCGCCGTCGAGGG 11459 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 11399 28 100.0 30 ............................ GACCCCCGGAGGACCAACCGTGGACAACGA 11341 25 89.3 32 ---......................... GTGGCTATCGCGCTTGATGCGGGCCCGGTCGA 11284 28 100.0 32 ............................ AGCACGTGGCGCATAAGTCGGCTCAGCAGCTC 11224 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 11165 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 11106 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGAAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //