Array 1 115-1867 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJO01000013.1 Moraxella catarrhalis strain 73/187/1 NODE_13_length_28926_cov_25.040731, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 115 28 100.0 33 ............................ TTTTGTTCAAATGTGCGATATTAATTTTGATTG 176 28 100.0 32 ............................ AAGTTTTGCCATGGTTTCCGTGATTTACCAAT 236 28 100.0 32 ............................ CTTGCCACGCTGTGTACACAGTGGCAGGGTCT 296 28 100.0 32 ............................ GCCACGAACTTTCGGGCAGATTCATGATTTTT 356 28 100.0 32 ............................ CATCGAATCGCAAAAACTCACTGTTGATCAAG 416 28 100.0 32 ............................ TCATATTCAGCATTATAATTGACATGGCTGTT 476 28 100.0 32 ............................ CTTGATAATTTCTAATTGCGCGGCGCGTATAT 536 28 100.0 32 ............................ ATTTAAGAAAAACTAAACCAAAGTACCAAGAT 596 28 100.0 32 ............................ TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 656 28 100.0 32 ............................ TCACACAAGTTTTTGCCAAAACAGTATGACCA 716 28 100.0 32 ............................ TCCAGCGGATAAGTTGTCAAATCTTGCCCCGA 776 28 100.0 32 ............................ AAAGCTTGTCTGAGCGGATTAATACCGTGCAA 836 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 896 28 100.0 32 ............................ TATTCTCTGGTGATTTGATTGTAGCAACAGTG 956 28 100.0 32 ............................ ACGCTATTAAGCAAAATAACATCAGCAGACGC 1016 28 100.0 32 ............................ TCGTAAAAATCGCAAAGTCAACAAAATCAAAA 1076 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 1136 28 100.0 15 ............................ ATCGGATTAAAAGCT Deletion [1179] 1179 28 100.0 33 ............................ AGTGATTATGATAATGCACAAGATTATTTAGAT 1240 28 100.0 32 ............................ GAAAGTTATCAAAACGGTTTTGGCAGTACTTA 1300 28 96.4 32 ...T........................ ATGGATTTACAGAAACTAGAAAAAGAATTGAG 1360 28 100.0 32 ............................ TCCAGCGGATAAGTTGTCAAATCTTGCCCCGA 1420 28 100.0 32 ............................ CATTAAGAGCTTCAAAAATCGGATTAAAAGCT 1480 28 100.0 32 ............................ CCAGACTCTGCTCAATCCAAAACTTTTATCAG 1540 28 100.0 32 ............................ ATACGCTCAAACCGACCGATTTGAAAGCAATT 1600 28 100.0 32 ............................ AGACTTTCTTGATTTGGAAAAGCCATTTTAAA 1660 28 100.0 32 ............................ GATAACATTGTCATCGCTCATGTTGAAAATGA 1720 28 100.0 32 ............................ ACTATGTCAGTCAATCTCATTGGTGCGTCAGC 1780 28 100.0 32 ............................ GTTGAGCTGTATCCTCTGATTCTCTTATTGAT 1840 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : ATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACTC # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //