Array 1 19723-20148 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVHW01000023.1 Clostridioides difficile CD160 gcdCD160.contig.23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 19723 29 100.0 37 ............................. AAAAATGAAACACGTGATACAAAGAAAGTTATTTTAA 19789 29 100.0 37 ............................. CTAATTGTTCATAAAGAGATATAAAATAATTAGACAA 19855 29 100.0 38 ............................. ACTTTTTGGGATGCGTTAACAGCATCTTGTTTTTTCGA 19922 29 100.0 37 ............................. GAGTGCCAAGAGCAAGTACTACTTTCAATAAGAGCAA 19988 29 100.0 37 ............................. TAAATTTAGCTCCAGAAGTTATAGGCGTAGTTTCATA 20054 29 100.0 37 ............................. GATGTATTTGAACTCATGTATGAAATTTTAAAAAGAG 20120 29 82.8 0 ......................AAC.G.G | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 97.5 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : ATTTAAAATTTAATTAGAAAAAAATTAATTTTAAGGCAACCCCTTTATTATTTATGATTTTTTTATTTGAAATGTAGATAAATTCAGCAATGCAACTAATAAAAGTTTTATATTAACTAAGTGGAAAACAGAGTGGTTTCGGACATCTCTGTTTTTTTATCTAAATTAAAATTTGAAATATAACTTAAATAAAAATGTATAAATAATTTATAAAATAACTTATATAATAATTTTGATAAAAATGTATATATAAATTTAAATGATTTTAGTTTTCTATATTCAGTTTATATAACAAATCGAAATTTTTATCGGATAATTTATGCTATAATAAATATATAAATATGCAGTGTGCGATATTTCGAAAATAAATGTTGTAATGATTGTAAACACTGAGTTGTAATGTGTTTTTGAAAAATATCAAAAAGCACTACTTGTGGCTCACTGCAATTTTTAATATTTAGTCTTGCTGAAAGTATTGAAAATGACAGATTTATTTTGGG # Right flank : GTAGTTCTAACTACTCTGTTTTTTATTTGTAAATTTAATAAAATTAAATAAATGGTAAAAATTGGAAGTTGATTATTGCAAAAATAGGTACTATACTTGTAGTATAAAGAAGATATATATCGAAATAATACATATAAACTACGTACGTAAAACAATTTTAAAATAATCATAATCTTTAATTTCAAATTCATCTTAGAATATGACATGCACAAGTAAAAAATATAGATTATATTAGTTTCAAGAAACTTTAAATTGGGGGGAAGGAAGTAGTCTATTGTTTTTCAGAAATAAGGAAGTTGTAAAAAAATCAGAATATTTTGAATATAGGGGTGATTCTTATGGAAAATTTGAAACTTGAATCAAAAGTGAATTACACTAAGAATAAGAAAAGAGTTGCTATGTCTATCAATCAAATGAAAGAAATTTCTAAAAAAGATTATGCATTTTTAACAAATTGTATAGAAACATTTTATATGAAAATAAAAGAGGTTTGATAAATT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5490-6044 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVHW01000053.1 Clostridioides difficile CD160 gcdCD160.contig.53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 5490 29 100.0 37 ............................. GGAGAATACTCTGTAAATTCCTTCACAGGAATTTCTA 5556 29 100.0 37 ............................. TGTTCACTGTTTCAAGCATCTTATAATCTTTGTAATT 5622 29 100.0 37 ............................. TTTTTTATTATTATGTCATCACCTAAAGTTGCTTTGT 5688 29 100.0 37 ............................. GGAAAATTTAAAGAATGGTTAGACAATATTATAAGTA 5754 29 100.0 37 ............................. TGGGTGGAGCATTAGGAGTATCTATGAAAGATTTATC 5820 29 100.0 37 ............................. TAATTTTCTCTATTTTTTTGTCTAAATGCTTAATTGG 5886 29 100.0 36 ............................. CTCACCTTTTTTACGTTGCCAGTAAAAAAATGCTAA 5951 29 100.0 37 ............................. TTTGCAACAGTATAGGTTATAGAAACTGCATCATAAT 6017 28 79.3 0 .......G.......T....-..TC...A | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 97.7 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : AAGTACTATAGAGAAGTACAAACTGGTGAAAAATCTGTATTAGATTTACATATTAGTGAAGATAATATTATGACTGATGAAGAGATTCAAAATGGTATAGATGAAGTTAAAAAGAAAAATTATCAGAGTTATGTAGACCCATTAGAACAAATAAAGAAACTAAAAGAGTTGTTAGATTCAGGAGCAATTACACAGGAAGAATATAATAAAAAGAAAAAGGAATTATTAGAATAGATGATATAGTAAGTACTTACAAATATATAGGTGTTCTTAAATTGATAACTTATTTCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTCGTGATAAAGTAGGATTTAACAGTTGCAATGTAAGGCATTGAGGCTGTGTGATAAGTGTTATCAACTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGCATTGGAAATGCTAAGTTTATTTTGGG # Right flank : ATTAAAAATAATCCAAAAACACTTGCTTATGGTAAGTGTTTTTTTAATTGAAAGGATGTGATTATAATATAAAATAAATATAGAATAGGTAAAATATGTAAGAATTATATGTTATAATATTTTGAGCAAGGAAAATAAAATTGAAAAGCTAAGGGTGATTAAAAAAATAACTTTTAAATTCTAATCAATTAGAGAAATTCACCTTTTACAAAGTAAATTTTATCTCTTTGCTTTCACTATAGCATAAATTAGAAAAAATATGTAAATAAAGAAACAATGCTTATTAAATTTAATAGGCATTTTTTATTTTAATATTAAATAAGGAAGTGAATATATGGTAAGAAAACTGCTGTGTAATATTCAAAAACACATTAGAAAGGAAATGATAACTTGGTAATAGATATATACATAAAAAATGAAAAAGAAAAAATAGATTTCCATTTCCCAGTTAATCCACAAGATTTTTTATCTATTAAAAAAGAAAAAAGATTTGAAACTGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 10859-11805 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVHW01000064.1 Clostridioides difficile CD160 gcdCD160.contig.64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 10859 29 100.0 37 ............................. AAGCAAAGGAACAAGCAAAAATAGGATATCTTAGTGC 10925 29 100.0 36 ............................. TTTAATCCTTCGGGAATAGTAAGTATATTACAGTAG 10990 29 100.0 37 ............................. CCTTTAATTATTTATTATATTATTTATTTTTATGTTC 11056 29 100.0 37 ............................. CGCCCTTTTTCTCTATGAATATATCTACTGCTTTTAA 11122 29 100.0 37 ............................. TTATATCTATATACGACTGGTCAACTGTAATAGTAGC 11188 29 100.0 37 ............................. TTGTTAAGAAGAATTGAATTTGCATGTGGTCTAGCAT 11254 29 100.0 37 ............................. AACTTCCTATGTTGAGTATAAAAATTAATCCAATCAA 11320 29 100.0 36 ............................. TTATGATAAGTTAAAGCATTTTACAAATACTGATGA 11385 29 100.0 36 ............................. AAACCCAAAGCCTAAAACTAAAGCTCGAAAGTTTTT 11450 29 100.0 37 ............................. CAGCTAACAAGTGAGGAAAGAGCATATTATAGCCAAG 11516 29 100.0 37 ............................. ACATAAATGTGCCTACTAACTCTTATAACCTTCCAAA 11582 29 100.0 36 ............................. CCCAAAAGCATTTTTATAGAATCGTGGATTTTCTTG 11647 29 100.0 36 ............................. TGTAAAATCTTCAAAGAAATCCATGAGGGACTTAAA 11712 29 100.0 36 ............................. ATTCAAAATAAACTGAATTTTCTTGAATTAATAAAG 11777 29 89.7 0 ...........G....T...........T | ========== ====== ====== ====== ============================= ===================================== ================== 15 29 99.3 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : TATTTGAAGAGAACATTGTTTATATTCTCAGATGTTTCTTTATCTATTTCATCTAAAATGTGAGAATATCTATTCATAGTTATTTTTATATCTCCTAAGTATTTGATGTATCTATCAATTACAGCGATATTGTTTGGAGTAACAAATTTATTGTTGCTTATAGTCGATTTTAATTAAATGTTTTTCAGTATCTTTTTTCTTATGAAGTCTAATTTAACATACATAAGAACACCATCTTTTAAGTTAAAAGGATTATTTAATTATATTTTATAACAAGTGCAAAATTTTTTCATAGTTTATTAAAAAATAATCTATTTATGATATAATAAAAATATAAAAGTTTTGCAGTGTTCGATTTTTTCGATGATTTGCTTGTAGTCATTGAAATTACTGCACTATAGAAGTTTTTATGAAGTGTCAAAAAACACTATTGGTCGGTCACTGCAATTTTAAAAGAATTATGTGGATTGAAGTATTGAAAATGCTCAATTTATTTTGGG # Right flank : TTCAAGCAAAATTAAATATGGCTTGATAAATAGTAAAACATCTATCATAAATATATTAGTATTAAAAAATATTGAATCAAGTCTAAACAATACATTAGTGGAATTGCCAGAAAAGATAAAACAATCTTTTGAGAGTGGAGATACCAGCACTGAGAATTTAACAAATCAATTAACTTACGCTAATAATTCTATAAATCAGTTAAATACGGAAATTTCTAAACGTGCAAAATTTGCAAAAAGTAATTGTAATTCTTTTGGTGGTTATGCGAGTTTAAATGTTTCTTTAAACTTCACACCTAATTTTTTTATTATTTGTTATATTAATAAGAAATATTATGCATATATTTATTCTAGTTAGATTGCTACTATTTCTGGAAAAATTTATCAAAGTAAAACAGGTGGCATATTTCAAGTTCCACTTAATGATAGTAGATTTACATATAAATTAACCAGTGATTATTCTCAAACTAATAAGTAATGTTGAGTGGATAGCTATTAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1-941 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVHW01000063.1 Clostridioides difficile CD160 gcdCD160.contig.63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1 29 100.0 36 ............................. TATAGTACTAGATATATGTATATGCAGTTGGAACTT 66 29 100.0 32 ............................. GCCTTAAAGTACCCTTTGCTAGTTTTAAATCA 127 29 82.8 36 T.C.C..T....T................ ATAGACCCTCCAGTTGATTTATTTCCACCATTTCCT T [138] 193 29 100.0 37 ............................. TTTTCTCCGATTGACGGTGTGTAGCCCTGCTCCCCTT 259 29 100.0 37 ............................. AGGTTATGGGTTGGAATTACAAGAAAGAAGAATGTAG 325 29 100.0 36 ............................. TAATGCCAAGAGCAATAGGAGCAACAGCAGAAATTG 390 29 100.0 37 ............................. ATAAGAGTAGTTTAAAAAGTAATTAATTTTTAATCTG 456 29 100.0 37 ............................. AAAGAAATTATGTCGAGTTTTAGCTTTGAAACATATG 522 29 100.0 36 ............................. TAGTAAAATCTTGTGTTCTTTTCCAACCATTAGAGC 587 29 100.0 37 ............................. GGAATTAAGTTTAACGCTTTTATAACTCCATTTATAC 653 29 96.6 37 ............................T TCAAATATAAAAGACTTTACATCTTTGCCATCGATTG 719 29 75.9 33 G...............A...C.A..C.GC ATTCTAAGTGGGTGGTAAAACACCATATACCTC 781 29 96.6 38 G............................ ATTACATGGGTAGTATTAGGCATTCTAGCTTTTATAGT 848 29 89.7 37 G............A.T............. TCGTTTATCATTGCTAGCCTAGCATTCGTACTGGTCA 914 28 82.8 0 ...............T....-.CT....A | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 95.0 36 ATTTTATATTAACTAAGTGGTATGTAAAG # Left flank : | # Right flank : ATTAAAAATAATCAAAAAACACTTACTCAGGTAGGTGTTTTTTGATTGAAAGAAGGTGATTATAATGTAAAAATTTTACTGATATAGTATAATAATCCTATAAATTCATTATAATAAAGGGGGATATTATGGGATTATTTAGTGGAAATGAAAGTTGTTGTATATGTGGAGAAAAAGGTAAACAAAAAATATCTGATGGTGTAATATGTTCTGAATGTTTAAAAAAATATAAAGATACATTTTCTATAGTCGAACCAACAGATGTAATTAAAAAAATATCTTCTGAGGAAATAAAAAAATCAATAAGATTAACACTTGAAAATAAAAAAAGATTTGAATCTTTTAACGCAAGTAAAAAAGTAGGAATTTATTTATTAGTAGATGAAAATAAAAAACAATTAATTATGTCTGATAAAATAAGCAATTTAAATAAGAATAAGAGAGTATATGACTTTAGGGATATTATTTCATTTGAACTTTTAGAAGATGATGAATCTATA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [10-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 3591-5127 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVHW01000063.1 Clostridioides difficile CD160 gcdCD160.contig.63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3591 29 100.0 36 ............................. AAGACTTGAACAAGTATATACACACATGTGTAACAG 3656 29 100.0 37 ............................. GTTAATGGTTCATACTTATCAGTTTTACCATTACCTA 3722 29 100.0 35 ............................. ATAACATAAAGAGCAGCTACTAAAATTAGTAACTG 3786 29 100.0 36 ............................. TTGTTACGCCCATTTCATCTGCCCAAATCTTCGGAA 3851 29 100.0 36 ............................. TTTTATATATATTATTAATCGAGTTTTTTATTATAT 3916 29 100.0 36 ............................. TTGGGGAAAGTGTGCCAACCCCAAATAAAATATAAA 3981 29 100.0 36 ............................. TGTTCAACTTTCTTAATATTGTTCTTGTACTCCCTC 4046 29 100.0 36 ............................. ATAACATCAGATGGGAAACTAAGTGCTAGAGATTTA 4111 29 100.0 36 ............................. CCCTCTATTGGTGAAAGGTTCATTATTTTACGCCAT 4176 29 93.1 37 G...............A............ TTGGAACTGTAAAGAAGATGTTAGAATATGTTTGCAA 4242 29 96.6 38 G............................ TCTTTATTTATTTCAGTAACTCGTTGCAAAGTCCTATT 4309 29 96.6 37 G............................ TACATTGGAGTAGCTGCAATTAGTAAGATTCTTAAAG 4375 29 96.6 37 G............................ ATGTCCCCACATCAATTTTCCTCCGCACGAAAAAATC 4441 29 96.6 37 G............................ CCCTATATATTTAACATTTCTTTATTTTTTGCTATCA 4507 29 96.6 37 G............................ GAATTTAAGGCTGAACTTAAAAAAGAAAATATAAATG 4573 29 96.6 36 G............................ TTTTTAGCACTTTTTATATCCTGCTCCAACTGAGGT 4638 29 96.6 37 G............................ TAATTGAATCTATCAAAATGCAAAGATGAAGGGTCAA 4704 29 100.0 37 ............................. TTTTCATATTCAATATAAGTTTGATTTATAAAACTTT 4770 29 100.0 37 ............................. TTTAAATAATTTATTTTTTCTATTATATAAAACTTGA 4836 29 100.0 37 ............................. GACATTGTGTATCTATTTTGCAATACCATTTCATATT 4902 29 96.6 36 G............................ TTGTATTTTCATGGATTTTTGAAATTAGTTTGTCAA 4967 29 89.7 38 G..............A............T AAGCTTTTACTTGCATTAAATTATCTTTCTTTTTAGCC 5034 29 93.1 37 G..............A............. ATGTCCACGTCGAGGTAATCCGCTATACTTTTGATGA 5100 28 89.7 0 ....................-..T....A | ========== ====== ====== ====== ============================= ====================================== ================== 24 29 97.4 37 ATTTTATATTAACTATGTGGTATGTAAAG # Left flank : AGATACAAGGTGAAAAGAAGAATTATCATGTAGTATACAAGATTGAGTAAATTCTATTGTATTAAATAATATATTTTAGTTTAGTTTTGAGGGGGATTAATGCAATGTATGAGAATTTACTTGATATGGATAGAATAGAACTTATTAAAGAACTTGGAAGTATCTTTGAAAAAATGAGAAATGAAAATCCAGAAAGATTTTATAGATTTGTAAATTTAGTGAAAGAAGAAGTTAGGAAATCAGAAGAAAAAGAGAATAAATAATATAGATAAAGCACTTGGATATTCTGTTGTTTCAAGTGCTTTATATGTTAAAAAATGGTATAATATAGGTAAGAGTTTTGCAGTGTTCGATTTTTATGTTTAAGTATGCTTTAACAGTTGAAATACAAGGTATTGAGAGTATACGATAAATGTTATCAATTGCACTACTAGCCGCTCACTGCAAATTTAAGAGATTTGTATATGTGTAGGTATTGAAAATACTTAGTTTATTTTGGG # Right flank : ATCAAAATACTAAAAACACTTACTTGAATAGTAGGTGTTTTTTTATTGAAAGGATGTGATTATAATGTAAAAATTTTACGTATATAGTATAATAATCTTATAAAATTATTGTACTAGGGGGATTTGTTATGTTTTGTTCAAACTGTGGTTATGAGATAACTGGTGCAGGAAAATTTTGTTCAAACTGCGGAACGCCTGTATTAGTAAATACAGTTAACAATGATGATTTCTTTATAAATATTCATGGAAAAGAATTAAATCTGACTAATATTTATAAAGAAACTAAAGGAGATAAAATTTTAGCAATTGATATTGTAATGAGGCTACTAGAGCTAGACATAAAAGAGTGTAAAAATATTATATATCCAGCTTTTAAAGAATTAAAAGAGTTAAGTGAAAAAATAAATATTGAAGAAGAAAAAGACGAATTAAGGGAAGATAACTATAAAAAATTTAATGAATTTGAGAATGATAATGTAGCACGTTGCCCCAAATGTGGT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 103915-101329 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVHW01000095.1 Clostridioides difficile CD160 gcdCD160.contig.95, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 103914 29 100.0 37 ............................. TAATATATTCTGTATTATTTTCTTTTAACATAAGTCC 103848 29 100.0 37 ............................. ATATGACATATAGTGGGACAGCCCTTAACCACTCAAG 103782 29 100.0 37 ............................. TACTTAGTCTTTTTATTTTGTAGACAAGGAGAATAAA 103716 29 100.0 36 ............................. AAAACTTATTCTTCCTGCTGCATCATTCGGAACTTT 103651 29 100.0 36 ............................. TTTTGTTTAAGTAATTTTGCTAGTTCTCCAATTAGT 103586 29 100.0 37 ............................. TTTGGGGGCAAAAACTCCTTATGCTCTGTTTTAAATA 103520 29 100.0 36 ............................. CTATCGGAACAAAGCTTGTAATTATCTTTTATCGTT 103455 29 100.0 36 ............................. CTATTAGAATTAATGAAAAGATATGGGATGAATTTA 103390 29 100.0 36 ............................. TAAAAAATAGAATGTGTAAGAAGTATTAAATAGAGT 103325 29 100.0 36 ............................. GTAGCCTGTACAAAATAGAATCTTAGGAAAATGTAC 103260 29 100.0 36 ............................. TTATTTAGGTCAAGCTGAACTCTTCTTAGTAGCTTA 103195 29 100.0 37 ............................. CTTTCTACATTTGAACTCTTATATCTATATCTTCCAT 103129 29 100.0 36 ............................. TAATATTTTTTTGCAAGTGACCAAAGACTGTCGCCT 103064 29 100.0 37 ............................. AAAATTTGTATATATCTGTCTGAAAATTGGCACTCTA 102998 29 100.0 36 ............................. AACGTACAAAACAAAGCAGTAGTAAACGCTATCGAC 102933 29 100.0 38 ............................. AATTATATTTTATATAATACATGAACGATATTACAAAG 102866 29 100.0 37 ............................. ATTCCATATGACATAGAAATAGCCAGCAATGCAAAAA 102800 29 100.0 36 ............................. TTTTAAAAGAAGGTGCGAAGATGATTAGAAAAGGAA 102735 29 100.0 37 ............................. ATTATCATTAATAATTACATTTACATATCTAACTATG 102669 29 100.0 36 ............................. TATAATGCTAACTGGTACTGGCATGAAGGGGTGAGA 102604 29 100.0 36 ............................. ATTTAACAAAAGGTGTGGGGGGTGGGGGTCTTGCAA 102539 29 100.0 37 ............................. AAAAGATATAGATAAGGTTAAAAGGTATTTATATGAA 102473 29 100.0 36 ............................. GGCTTTACAGTATCAACGTAAAATTGAAACAGCTAT 102408 29 100.0 36 ............................. GACAACCCTAATGCTCCGATTTATAAAGAATATATT 102343 29 100.0 37 ............................. TTTGGAATTTCATTTACTAAAAAGTCAGTTGCAACTC 102277 29 100.0 37 ............................. TCTAATAATCAAATGGAAGGTGGCTACTACCAAGCCA 102211 29 100.0 37 ............................. TTTTAAGCAAAAAGATGCTACTATATTATAAACATTT 102145 29 100.0 36 ............................. GTCCCAAATGTACATCATTACCAAAAGTTCTGACTC 102080 29 100.0 38 ............................. CAAAGAAATTATTCGCCTCTGTAACGAGAAATATAAGC 102013 29 100.0 37 ............................. ACATTAGATGCTGATTGCTCGACTGGGTATACAACTT 101947 29 100.0 37 ............................. CATTCTCCCTTAGTGGCTTTACAAACTGTTTATTTAA 101881 29 100.0 36 ............................. TTTGAAAAGTTTGAAAAAGAAACAGGACTAAAAGGC 101816 29 100.0 38 ............................. ACAAAACTATTTTCAAAGTTTTTAGTCCCATTCCCTGC 101749 29 100.0 37 ............................. AAACAAGTGTAGGGGTGATAAATTTGAGAGATAGAAT 101683 29 100.0 37 ............................. AGGGGTAGGTCACCACATGACTTACATGTTTTTGCAG 101617 29 100.0 37 ............................. TCAAGTACAAAAGAATCAAAACTATATCTCTCAAATT 101551 29 100.0 34 ............................. AATTTCTTTTTCTGAAAAATTATCTCTTGAAAAT 101488 29 100.0 37 ............................. TAGACACATTAAGAACTATTTTCTCACAAGCATCCTC 101422 29 96.6 36 ...................A......... TGGACTCAGCAAATGTTTTTTAAACCTTTCAAAAGA 101357 29 75.9 0 A....G..........A.CA...C....T | ========== ====== ====== ====== ============================= ====================================== ================== 40 29 99.3 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATTTTATCAATGATGAAAAGTATAAAGTTTTAAAGGCATGGTGGTAAGGTATGTTTGTTATTGTTACTTATGATGTTGTTGAAGCAAGGTCATTAAACAGGGTTAGAAAAATACTTAGAAAATATTTGACTTGGACTCAGAATTCTGTTTTTGAAGGAGATATTACTGATGGGAAGTTACATAAATGTATTTCTGAAATAGAAAAGATTATTGATAATAGTGAAGATTCGATTTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTGTGCTAAAATAGGGCTTAACAGTTGGAATGTAAGAGATTGAAGGTATGTGATAATTATTGTCAATTGCACTATTGCTCGCTCACTGCAAATTTTGACGTTTTTATTGAATTATAATTCCTTGAGTGTAGTATTTTCAATCTATTCAGTTATACCGATTTTGGG # Right flank : GAAGTAAACTTACACTATAAATAAAAATCAACATAAAAATGAGGTGAAATAAAATTTATGATAAGAAAATCAAATGATAAAGATATAAACAAAATCATGGAAATATGGAAAGAAAGCACAATCAAAGCACACAACTTTATAAGTAAAGAATACTGGGAAAATAACTATAACACTGTCAAAAACGAATATATACCTATATCAGATACATTTGTATATGAGGATGGTCAAGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAATTCAAACTATCAAAACCTAGGTATAGGAGGTAAACTTTTAGACTATGCAACTAAAGAATACAAGAATCTAAATCTAGCAGTATATAAAGACAATAAAAAGGCGGTTGTATTTTACAATAAAAAAGGATTTAATATAGTAAAAGAGCAAATAAATGAAGATTCAGGATTTAAAGAGTACATAGTGGAATATGGTAAATAACGTTAATATATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 141195-139525 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVHW01000096.1 Clostridioides difficile CD160 gcdCD160.contig.96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 141194 29 100.0 36 ............................. GTTGATGATTAATATTTCTTTAGTCTCAGAATCATA 141129 29 100.0 35 ............................. ACGTTAGAAACTCTTTGCCATTCACAATTTTCTTT 141065 29 100.0 38 ............................. TTTTAGACCTGAAAACTTGCTTATTGAAGAATATAATT 140998 29 100.0 38 ............................. TTCTTTATTGTCTATATCTATAATTTTAACCTTCTCAC 140931 29 100.0 36 ............................. CAGTATTTGATTTATTAGTTTTAGGCTTTATAGCTT 140866 29 100.0 36 ............................. TCGTCCTGCACGGTTTTTACACTTGTTTCTTTCACA 140801 29 100.0 37 ............................. TTTTCTAATAATAAGTCACCATCTCGACCTGGTACAC 140735 29 100.0 37 ............................. ATTATCAATAAAGATTGGCATCTTAACTTCAAAATGA 140669 29 100.0 37 ............................. ACAAACAAGTTGTAAGGAAACTTCCAAGCAAACCCAA 140603 29 100.0 36 ............................. ATAGATAATGTAAAAAAAATTGCATGTGCTTATTCT 140538 29 100.0 36 ............................. ATAAAAGTTGTAGAACTTTCTTTAAACAATCAGGGC 140473 29 100.0 37 ............................. GTAGAAGAAAACACATTAAATTCATCTGATAAAAATA 140407 29 96.6 37 .................C........... GATATATCTCCTCTTTTAATAGCTGAATATAGATTTC 140341 29 100.0 36 ............................. AAAGTAAATCCATGAATAACATAATTTTTAAATAAA 140276 29 100.0 36 ............................. ACTTCTATTGGAAAAATGTCTTGGTACTAACTTAGC 140211 29 100.0 37 ............................. TTTATTAGATACACATACATCTTAATATTTTCTTCAT 140145 29 100.0 40 ............................. AAGCATAAAAAATTAATTTTACTCAATAAAATAGTTTCAG 140076 29 100.0 37 ............................. CATAGCACTACACAAAGCATTAACAAGAGTTTCGCTA 140010 29 100.0 35 ............................. TTTGACATATTAAGTGATGTGGATAGAAGAATATG 139946 29 100.0 36 ............................. TCCATATATTTTTGATATTTAACCCACTCATACATA 139881 29 100.0 37 ............................. TCCTTATATGTAACCCAAATATTTAACCACTTTGTCA 139815 29 100.0 37 ............................. ATGGTCCAGCTACTACTGTCAACGCTATAAAACTTGA 139749 29 100.0 36 ............................. AACCCTTTCGCTTTAGCTTCTGCGTTTCCTGTCGCT 139684 29 100.0 37 ............................. GTAGATACTTGAAACTGTGCAAGGTCTAAAGACTCTA 139618 29 100.0 36 ............................. TATTGAATGGTCGAGAGTTGTAACTAGGCACTACAA 139553 29 89.7 0 .....G..........A......G..... | ========== ====== ====== ====== ============================= ======================================== ================== 26 29 99.5 37 GTTTAAATTACACTAAGTTAGTTATAAAT # Left flank : TAAATTAAACTATATTAGTTATAAAATGCCATGCTTATATTATGTGTTTGAATTAAACTAAATTAGTTGAGATATTAAGAATTAAAATGTTAATACAAGCAAGTTATATTAAAATATATAAAAATCATATGATAATATTTATATATTTTAGATAATGAAAAAACTAATTAAGGACATAGACATGTTTTTAATAGTTTGTATTTTGAGTATAAAAGATATTGATTGTTTAATTAATATCTTTTTATATTGTTATCTTATATCAAAAAGTATGTAATAATTCTATGTTAGATATGTTTTTAAATTTATTATGTCTTAAAAATAATATTTAGTAGTTTTGGTTTTGCAGTGAGCGAAAAAATCACATAAGTGGCTATAAATTAGTGATGGCAAAGATTACAACTGTATTTTTGATTATACCAAAAAACACTACTTAGGGCTCACTGCAAATTATTCATTTTAATAATACTATAAGTATTGGAATTACTGTAGTTTTATTTGGG # Right flank : TTACTTATTCATTAAGAAACTTAACTGAGAGTTTGATTTATATTACTGAATTATCAAGAGTCTTAGAAAGTAGAAAATTATACCCCAATAATACCCCAACTACAAAAATAAACAATAAAAAACAATCAAAAAGATTGCTCTAACATCATAACTAAATAGATATATACCTACACTTACAAAAACCAACAAAACAATCAAATAACCACTTATAGACTCCCCTCGTCTCCACCATTGAAATCCAAGAAAAATATTAGCAAATTGCTAATATTTTTTTGTGAAAACCAATCATAACCTATATAATTAACTTATAAAACACACATGAAGAGGTAAAACTATATGGCTAAAATTGATAATATGATGTCCATATTATGGATGCTAAACTCAGATAAAAAAATCACCGCAAAACAAATATCTGAAAAACTAGAAATAAATATAAGAACTGTCTACAGACACATTGATGCACTATCTGCTAGTGGAGTACCTATAATTTCAGATACAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTACACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 3372-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVHW01000094.1 Clostridioides difficile CD160 gcdCD160.contig.94, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3371 29 100.0 36 ............................. TGTAATGAAATAAAAAAAATTGCATGGGAAGTATTA 3306 29 100.0 37 ............................. GCATTTCGGCATATGACAACTGCTATGAATATAGTAC 3240 29 100.0 36 ............................. TTAAACACCTTAGTCTTATACTTACCATCTTTAATT 3175 29 100.0 37 ............................. TGAGTTTTCTATATTCAACATTATTAGTAAAATTATA 3109 29 100.0 37 ............................. TTGTTTAATTGGCTCACCTGTATTTTTGTTCCAAGCA 3043 29 100.0 37 ............................. GTGTTTTCTCTGCTTAATTGATAAATATTTTGGTATT 2977 29 100.0 35 ............................. GGGTAAGCAAGTTCTATAAACAAATAGCAGGAAGT 2913 29 100.0 36 ............................. AAGGTAAAACTTTAATCTTATAATAGTTATCTTGAA 2848 29 100.0 36 ............................. AATAAAAGGTATGACAAACAAATTTAATATACCTGT 2783 29 100.0 38 ............................. TTTGGAAAAAATGAAGAGATAGTTATAAAGCCATCAAA 2716 29 100.0 36 ............................. GACCTTTCTGTGTATTTTAGAAATCGTTCTGATAGT 2651 29 100.0 35 ............................. CAAAAATAAGAGGATAGGGGGGCAACACTTAGTGG 2587 29 100.0 36 ............................. TAGAGAATCTTATATGAGGTTAATCTCTTAAGCAGT 2522 29 100.0 36 ............................. AGGATAAAACTTTAATCTTATAATAGTTATCTTGAA 2457 29 100.0 37 ............................. TCTACATCATTATCAAAAGGATTATTCTCTGATGGAA 2391 29 100.0 36 ............................. TGTATCGGTTTAAGGGAGGGTATGTCTTTTTTAAAA 2326 29 100.0 36 ............................. TTACTTAAAAACAAGTAAAAAGCTATCAACATCCCT 2261 29 100.0 36 ............................. ATTTTATTTGTTCCGCTAGGTAGAGGGTTAGTTATC 2196 29 100.0 37 ............................. CATTAGCTGCGCTTTTAATTTGAAGTCTAAGAAGCTC 2130 29 100.0 37 ............................. TCACTTGCAGTTGCAATGGTTGGTGTTATATGTCTAG 2064 29 100.0 37 ............................. CCATATTCAAAATACCAAACAACAGAATAAGATTTTG 1998 29 100.0 37 ............................. TTAGCACATTCTCTTTTTAATTTACTTAATATTATAA 1932 29 100.0 35 ............................. CATTGATAAGTAGCATAACCACCACCATTAAACAT 1868 29 100.0 38 ............................. ATGCTTCATATTAGGTCTACTGGCTACTATACTAGATA 1801 29 100.0 37 ............................. CAAAGTAGGCTTTAAATGTACGACTATATTTTCTTAT 1735 29 100.0 37 ............................. ATAGCAAAAAAAGGTTTAAAAAAATCAGACAATAAGG 1669 29 100.0 36 ............................. AACATAAAAAATACCCATAATAGAAATCGCAATCGG 1604 29 100.0 36 ............................. CTATTCGCAGATGTAGCAATAGGATTAAATAACCCA 1539 29 100.0 37 ............................. GTTCTCTTGCTAAAAAAAATAGTAATCATTTTTACAC 1473 29 100.0 36 ............................. TTTACTAATTCATCGCTAACCAGGTCTAGTCCCTCG 1408 29 100.0 37 ............................. AAGCTAAAAATATTCGTTCTGTAAAAAGCATTTAATT 1342 29 100.0 37 ............................. ACGATTGTTTGATACAGTGTTAGCCTAGTTCCCGACT 1276 29 100.0 38 ............................. GCAAAATCAAAAACTTTATCTTTTAGCCAACTACCCAT 1209 29 100.0 37 ............................. TTGCTGTTCTTCCAAAAATAGATTGTATAGCAGCTCC 1143 29 100.0 37 ............................. TCCTACAAGTCAACTCACTTTTCAATAACTCTTTTAA 1077 29 100.0 37 ............................. TTTTAAGTATCATTCAATAATAATTTACAATGTTTAT 1011 29 100.0 37 ............................. ACGCTACTTAAAATTAAATTTGCTGGAAATTTTCTTA 945 29 100.0 36 ............................. TAGTAAAGAAACTATAACTGTGATGTTGTGAGATAA 880 29 100.0 36 ............................. TAAATGTGAGATATACAAAGAAGATAAAATAACTTT 815 29 100.0 37 ............................. CACAACGTTGGACTAGTACAGTTATAACATCTATTCT 749 29 96.6 36 ...............A............. TCATTTGTTAATTTTTTCATTGTATTGTTATAACTT 684 29 93.1 36 A..............A............. TTTATATACTGTACACGAGGGCTTTGATTAGTATCC 619 29 93.1 36 A..............A............. TATAGTACTAGATATATGTATATGCAGTTGGAACTT 554 29 93.1 31 A..............A............. GCCTTAAAGTACCCTTTGCTAGTTTTAAATC 494 29 82.8 36 A..C...T....T..A............. ATAGACCCTCCAGTTGATTTATTTCCACCATTTCCT T,C [482,489] 427 29 93.1 37 A..............A............. TTTTCTCCGATTGACGGTGTGTAGCCCTGCTCCCCTT 361 29 93.1 37 A..............A............. AGGTTATGGGTTGGAATTACAAGAAAGAAGAATGTAG 295 29 93.1 36 A..............A............. TAATGCCAAGAGCAATAGGAGCAACAGCAGAAATTG 230 29 93.1 37 A..............A............. ATAAGAGTAGTTTAAAAAGTAATTAATTTTTAATCTG 164 29 93.1 37 A..............A............. AAAGAAATTATGTCGAGTTTTAGCTTTGAAACATATG 98 29 93.1 36 A..............A............. TAGTAAAATCTTGTGTTCTTTTCCAACCATTAGAGC 33 29 93.1 0 A..............A............. | ========== ====== ====== ====== ============================= ====================================== ================== 52 29 98.3 36 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : TGTAAAGTATTTATGCAAGTAAAAAGCCACTCAACTCGTGGCAAGAGTAAAAGTGGCTGGGAATTTGATTTTAAAATCAAGTTCCACAAATTTAAATAATTACTAATTGTTTAAATTATGAACTTCACTCTACTGTCAAATAGATTGTAGTTCTTCTTGCTATTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTTATAAGTAATGAAAACTAAATAGATAATATAGTAACGAATTACAAATATGTAGGTACTCTTAAATTGATAAATTATTCCATTTTATTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTCGTGATAAAGTAGGCTTTAACAGTTGCAATGTAAGGCATTGAGAGCGTATGATAAGTGTTATCAATTGCACGACTAGCCGCTCACTGCAAATTTGAGAGAGTTTTATGTGTGTAAGTATTGAAAATGCTAAGTTTATTTTGGG # Right flank : GGGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //