Array 1 168445-166724 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUXS01000004.1 Salmonella enterica strain AR-12 NODE_4_length_191391_cov_21.2521, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 168444 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 168383 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 168322 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 168261 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 168200 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 168138 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 168077 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 168016 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 167955 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 167894 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 167833 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 167772 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 167711 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 167650 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 167589 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 167528 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 167467 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 167405 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 167302 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 167241 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 167180 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 167119 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 167058 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 166997 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 166936 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 166875 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 166814 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 166753 29 96.6 0 A............................ | A [166726] ========== ====== ====== ====== ============================= ========================================================================== ================== 28 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 186070-184577 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUXS01000004.1 Salmonella enterica strain AR-12 NODE_4_length_191391_cov_21.2521, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186069 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 186008 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 185947 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 185886 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 185825 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 185764 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 185703 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 185642 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 185581 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 185520 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 185459 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 185398 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 185337 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 185276 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 185215 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 185154 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 185092 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 185031 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 184970 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 184909 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 184848 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 184787 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 184726 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 184665 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 184604 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //