Array 1 17483-14505 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXIB02000055.1 Tychonema bourrellyi FEM_GT703 scaffold55_size32529, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 17482 37 100.0 40 ..................................... AAACTAACTTAACAGGAATCCAAAATGCCAATTGCCGCAA 17405 37 100.0 41 ..................................... GTTGAGTCTACTTTTTTATCAGGTTGGAGATTGAGATCGTC 17327 37 100.0 36 ..................................... GCGATCGAAAACCCTGAGTCTGGTAGAAATAGCAAC 17254 37 100.0 40 ..................................... AAAGGTGTTGAGGCGATGCTAACAATTGGATAAAGTGCTA 17177 37 100.0 39 ..................................... GAAAGACTCCAAATCTTAAATCTCCTAGAAGCCAACGAA 17101 37 100.0 38 ..................................... GGATAACACTGGAGCAGGTTGAAGGTTACGCACCTTGC 17026 37 100.0 40 ..................................... CAAGACTAATACCGCAGGAACTTTACCAGGACTCCCCTAA 16949 37 100.0 35 ..................................... GCGAAAACTACAGGAGTAGCACCAAAAGCCCTAAG 16877 37 100.0 33 ..................................... GTCAGATACCACGTTGCTACCGTAATTAATTAC 16807 37 100.0 34 ..................................... TAGGAATGGGATTAACTCAGTAGAGCTAATATCA 16736 37 100.0 38 ..................................... TGTTTACCTTGGTTAGCAAACATTACTGCCCTTTTTCT 16661 37 100.0 36 ..................................... ATCCCGAACCATGAAAACTGAACACAATTACATCGG 16588 37 100.0 40 ..................................... GCTACATCGAAGTCGCCGACCAATTGGATGGAGATATCCA 16511 37 100.0 34 ..................................... GTTCGATCGTCGGTGTAGCAATCTTAGCTTTGGG 16440 37 100.0 42 ..................................... ATGACGGATTTTGGATATCAGAAGCTCAATTAAATCGTCTTA 16361 37 100.0 34 ..................................... CTTTCTCAAGTTGGGATCGGGCTTTATCGCGCTC 16290 37 100.0 35 ..................................... AATTCCTCTTCCTGAATACAAAATAGATGGTTATT 16218 37 100.0 37 ..................................... GATCCACCAAGCCTTATCTTTAAATTGGTCACTTTGA 16144 37 100.0 42 ..................................... CTGCCGTATCGATCGACTGTAATAGGTTGCAGCTTCACTTTA 16065 37 100.0 39 ..................................... TTATGGGTGTTAATAAAGCTGGCAAAATTTACCGCATAG 15989 37 100.0 39 ..................................... GGCCGGGACAAAGAACCCACGAGTTTTTTAAAACCTTGC 15913 37 100.0 34 ..................................... TTAGATGATTCTTGCTTATGTCTTAGTTGTTAGC 15842 37 100.0 35 ..................................... TTAAAAATGTTTATGCCCGTGTAACGCCTGAAACG 15770 37 100.0 37 ..................................... ACCTGGCAAAAAAATGCCACAAAAAATCCACAAAAGC 15696 37 100.0 40 ..................................... ATCGGACATAAACAACAATCGAATACAGGGATACCCCTTA 15619 37 100.0 34 ..................................... AGATGACTTCAAAAAAGGGGATATGAAACCCTTT 15548 37 100.0 37 ..................................... AGTGTAGTGCTTGTAACACTGTACTACCGCGCATCAA 15474 37 100.0 33 ..................................... ACGGGAATCTGTTAGAAATTGGTTGTTTCCAAT 15404 37 100.0 35 ..................................... TTGGGCTGGCGATTCTCTCATTGGTTGCCTGCTCC 15332 37 100.0 34 ..................................... GCGGACTTCTATTTAAATTGGGAGTTCCGCTTTT 15261 37 100.0 33 ..................................... TGAAATGACTAAAGCTTGGGATAGGTTAACTAA 15191 37 100.0 35 ..................................... CGATCGCCCTGATTAAGAATTCAGATATTGATTCG 15119 37 100.0 37 ..................................... CTTGTGGAAAATCGGCGATCGCACTGTGGGGATTAGC 15045 37 100.0 33 ..................................... TGTCAATATTGCGATCGTACCAAAGTAGAGAAT 14975 37 100.0 34 ..................................... CAATAAAAGCTATAAGTTTTTGAGCTAATTTCAT 14904 37 100.0 34 ..................................... CCAGCAGCGCCGCCAATAGCCCAAGGCAAAACTC 14833 37 100.0 33 ..................................... GAGGGCTATTGAATGAATCAGAAGCGTCTCTAT 14763 37 100.0 35 ..................................... CATCCCCATATGTTGCGTCACGGTTGCGGTTACTA 14691 37 100.0 38 ..................................... TCTGGCTTTGCAAGATTATCCATACTGATAAACTGAAC 14616 37 100.0 38 ..................................... CAAGTGATTGAATAATAGGTGAAGCATTCGTCGATTCA 14541 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 41 37 100.0 37 GCCGCAATAAACCTAAATCCCTATCAGGGATTGAAAC # Left flank : CGGAAGACAAGCGCCGGACTAAGATTCACAAAATGCTGAAGTCTTATGGGCAGTGGATGCAGTACAGTGTGTTTGAGTGTGCTGATTTGACTGAGACGCAATACGCTAAGTTGCGATCGCGCCTGAACAAAGTCATTAAACCGAACGAGGACAGTATTATGTTTTTTCCGCTGTGCGCCTGCTGTCAAGGTAAGATTGAACGTATTGGTGGGGTAGTTCCGGCCGATCGCACAATATTTTTTGCCTAGTTTCCGTGAACTGGTAGGTGTTAAAATAGGGGTATCAAATTTTTCGGCTGAAACTCATGTGCAGCAAGAGTTTGATGCCCCTAGCCTGAAAAAACGATTCACGGAAAGTCTGAAAGCTTTACAGGACAACGTTTTTGGAGTGAGTATGGAAAAGTGGTGGTTGACAAGTCGAAGGGTGGAATGGTACTTTTGTTTTAGGTTCACGGAACAGCACCTTGAAAACCAAATAGAGCAAGGCTTCTGGAGCGGGCG # Right flank : TGGCAGCCGGAAACTCTTATATTCGTGCAGCCACAGATTTTAACCTGTAGGCTGCAACCGCACTCAAAATATCTCTAAAGACTACTGATCTTCAGCATAGATAAATCGATACAATTCACTAGGATCTGGCTCAGCGCTTTTCTCAGCAAAATCTACTGCATCATCAATTACTGCTTCAATCTTTTTCTCGATCGCCTTTAATTCCTCAGCAGTAGCCAAAGTGCGATCGATCAAATCAGCAGCCAACCTCTTAATCGGATCGCGAGGGAACCAAAATTCCTTCTCTTCCTTAGAACGCAACTCATCAGGATCTGCCAAAGAATGCCCGCGAAAACGATAAGTCAAAGCCTCAATCACCGTCGGCCCCTCACCAGCCCGCGCCCGCGCCACAGCCTCTTTTGCCACTTCCCGCACCGCCAAAACATCCATCCCGTCAACCTCAACTCCAGCCATGCCAAAAGCATGAGCCTTTTTGTAAATCAGCGGGTCAGAAGTAGCTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATAAACCTAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 10689-10116 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXIB02000088.1 Tychonema bourrellyi FEM_GT703 scaffold88_size27560, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 10688 36 100.0 43 .................................... CGATTATCTTCAATGTGGCGAGCCAAGGGACAAGTAGCACAAG 10609 36 100.0 44 .................................... GCATATAACCTGTTGAAGGGTGTATCCGTCTCCCCCTTCCAGCA 10529 36 100.0 41 .................................... TATCTCATGTTTTTTAGGTGTGGGCGGGTTGATGTTAGGGT 10452 36 100.0 35 .................................... TTAGGCTTCGATCCGATCAATTGTCGAACATCCGA 10381 36 100.0 41 .................................... TGTAGATAGTAGAGTCATTTACAAACTCGTCCCCCTCATCG 10304 36 100.0 37 .................................... GAATAGATGCGAATCCAATTTTGTATCAACCTATGCC 10231 36 100.0 44 .................................... GGGATAAGCAGCATACCACGAGCGTCACTAATTGCGTATGGTAA 10151 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 8 36 100.0 41 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : TTTCATGTAGCGGCCGGCTTGGCGCATCATCCACACGGGCGGGCGTTCTAGGGTTTCGCCACGGGCTGCGCGGAGTAGCAAGGGAACTTCATTTAATGCTGACATCTTAACTTTTCTCTGATTTATCTATTTTAATGCCTTTGGTAGCTTACCACTGTGCGATCGCGCTTTTTGACAAAAAATTCATCGGCGCGCAGGGAGTATTTCTGTCATTGCGAGGAACGAAGCAATCCCAGCATCTGTTTTGAATCGATTCTGCCTCCTAGACTTAGGAAACAATCGCCCGATCTCGATTTTGGGGAGTGGGGATTTGGTTGGTTGCGAGGCTGGCGGTAAAATAGCTGAAATGACATTTTTGCGTCGCGAGCCTCGCAGCATTGCTGGATAAGGGTTTCATGGATTTTTCTGGAGCGAGCACAGGTGTGAAATCCCAGAAAAAGATCTGACCCTCGCGATCGGCCTCTAGACACTTTGCGCTGTATGGGGTGTATGATGGAGGT # Right flank : TGGTAAGAGATGTTTGAGTATTGTAGGGTGCGTCAGCCCGCAGCGTTTCCCTTGTAAGCGTAAGCGATCGAGCTGACGCACCCTACAGGCCTCGTTAGTGGTTTAAATGCGTAGAAGTATAAACATTAGAACCTCTCTCTCTAGAAATCATCATTTTCGCTAGATTTTCCAACACTTTAATTGCCTGATTTTCCAAGTAAGAAAAATCGTTGATAAACTCAGCTAAACCCTCTTCCCCTTCCAAGTAATCGAAAAATGTTTGTAACGGGACGCGAGTTCCTACAAATACGCTGACACCGCTCATTATTTCGGGATTTGAATGAATGATTCCTTTTTTTTCCAAAACTTCTTCAATGTTCATGTTTTTGATTTTTCAATAAATTGTGTTTTGTGAGATGCGGGAAATATACGTTAGCTTGTATGGTGCTAAATGTTGGCAATGTTGATGTTGATAACAATTCAAAAAATCTCGTAGGGGCGGGTTTTACAGACAATTTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 724-4369 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXIB02000104.1 Tychonema bourrellyi FEM_GT703 scaffold104_size14171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================= ================== 724 37 100.0 37 ..................................... TTGACCAGTGCAAATACTACACTATCGACTATAAAAA 798 37 100.0 42 ..................................... TGACCGTGTGACTCGCCAGGGACACCCTGACGCTCGATCCAT 877 37 100.0 35 ..................................... AAAAATAATAAGATTTTTCTGACTTCCGTATATAA 949 37 100.0 46 ..................................... GGAACACATCGAGGGATTCAAAATCATCAGGATCTGGTGGCTCAAC 1032 37 100.0 40 ..................................... ATTAGCGCTGGACTAATGGCGGGAATTATCAAGCGCTCAC 1109 37 100.0 33 ..................................... TATGCTGGCTTTTCCAGAAATTCCGGGAAACTA 1179 37 100.0 36 ..................................... TGGCGGAAAGTCGGCTCGTACTAAATGGGAATATGT 1252 37 100.0 40 ..................................... CAAGGAAGAAATCGCGATTAAAACCCGCGATTCTGTGCTG 1329 37 100.0 33 ..................................... AAAATCTAAAAAAATAGCTGACGCTCACACCTA 1399 37 100.0 34 ..................................... CAATATTACCACTGCCAAACTGTAGGCTAAGTTT 1470 37 100.0 36 ..................................... ATGGTTCCGGCATTTATCAACCGACTAATCCTTTGA 1543 37 100.0 33 ..................................... CTGGTCGCGGGTCGTTTGCTGCTCGTTCTGTTG 1613 37 100.0 33 ..................................... CGATTGAACTGGTGCTGGTGTCTATATCAGGAA 1683 37 100.0 35 ..................................... TCAAGGGTTTTATTGATTTGGATTTTGAATCCTCT 1755 37 100.0 39 ..................................... ATTTTCAAAGTGACCAATTTAAAGATAAGGCTTGGTGGA 1831 37 100.0 33 ..................................... CTCAGAACGGAATATCTGGAAAATACATTGCTG 1901 37 100.0 33 ..................................... CTCCACCGGGAAAGCCGATACAGTGCCCGAAGC 1971 37 100.0 37 ..................................... CTTCCAGTCGCGGCGGGTAGCGGATTTTTGAGGTAGA 2045 37 100.0 40 ..................................... CATAGAATATCTGAATTTAGCTGCGGTAAGAATTCTTCGC 2122 37 100.0 38 ..................................... AAATGGCGGCCATTTTGTAGGATCGGCTCCAAAGCTTT 2197 37 100.0 34 ..................................... TGAGGGATTAACAATGTTGTCGAGAGTTATTCAG 2268 37 100.0 36 ..................................... AGTGCCGCTTACTCTCAAGTCTCCTGCTCTGATTTA 2341 37 100.0 37 ..................................... ATAGGTATTATTGGTTTTTCTTCAAATTGGATTACGA 2415 37 100.0 35 ..................................... TTGAGACTTTCGATTATAGTGTCAGCGGCAGTGAA 2487 37 100.0 34 ..................................... ACATTACGCCACGCTAGACCAACAGAAATTAAAA 2558 37 100.0 33 ..................................... ACAACTCAATTAATCGACGGATGATTTGGACTC 2628 37 100.0 34 ..................................... ACGCGGTAGGAGCTTATTTAAAGCACTTCAAATA 2699 37 100.0 33 ..................................... GGAAAAGATGACACCTACGTGCCAGTACCAACC 2769 37 100.0 33 ..................................... GTCTGACCCGACAAACGCTAGCCGACTGGTTGA 2839 37 100.0 35 ..................................... GCGTATCCAACCAGACTACGAACAATGTGGAAATA 2911 37 100.0 35 ..................................... TGAAAACGGGCTCTGATTATTGGTTTGCCTATACC 2983 37 100.0 34 ..................................... TTTAAATTTCTCGAAGAACGAGAAATTAATTTAG 3054 37 100.0 34 ..................................... AACGGCGTTAGACCAGGAGTAGCGCCACCATAAG 3125 37 100.0 33 ..................................... GCTTCAAGAGACGGCGATAACCGCGATCGACGC 3195 37 100.0 35 ..................................... TGGATTCTTTCGACGTTATGACCGAGTGCGGAATG 3267 37 100.0 35 ..................................... AGTTTACGCCGCCAAGTATTAGCAAGCCAAAAAGC 3339 37 100.0 38 ..................................... TAAAGCCTTCTGAGTTCCATCAATCGGTTGCTGGTCAT 3414 37 100.0 33 ..................................... ACAACTCCTACTCCTAAGCCTAGTTATGTGACT 3484 37 100.0 41 ..................................... TTTAAAGATTCGATTATAGTATCCGCAGCGGTAAATTTCTT 3562 37 100.0 38 ..................................... GCGATCGTTGAAGGATACGCAGTGGCTGCTTTCGCAAA 3637 37 100.0 34 ..................................... AGAAAAGCTAAGATTTTTGCCAAGAATTTAGCAA 3708 37 100.0 34 ..................................... TTACCTTGCCCAAACTACCGAACCTTGAAAAATG 3779 37 100.0 35 ..................................... TACCTCACGCAGGCTGAGGGGGACGGGCGGTACAG 3851 37 100.0 41 ..................................... TCGGAACAAGAAACTGCTTGGCGATCGCCTAGTCAAGTCAA 3929 37 100.0 36 ..................................... TACACAATGATATTGTACTGTTAATCTCATAGCCAA 4002 37 100.0 35 ..................................... AGTGAGCTGACGGAACGGATGGAAAGTAAGTCGGC 4074 37 100.0 39 ..................................... TTTCTATTTTAGTTTGCACATACAAAGCCATGCTCCAAG 4150 37 100.0 36 ..................................... CTCACGCCCTAGAGAGCGGAATGAACCCCGTTACAG 4223 37 100.0 73 ..................................... AAGAAAAAAACAGCAGGCGCAAAAAAAACGCCCCTGCTGCCAACAATTAGTTACCGCGATTATAACACATTGA 4333 36 86.5 0 ....G..-A..C..............C.......... | A [4346] ========== ====== ====== ====== ===================================== ========================================================================= ================== 50 37 99.7 37 GCCGCAATTACACTAAATCCCTATCAGGGATTGAAAC # Left flank : TCGTTTCAGCCTTCGGGGGTGAGTGGGGGGACTTTGGGTGCGATTTGGGGCAGTTTCTTGGGTGCGATCGGGGGTGCTGTGTTGGGTGCGGGTTTGTCGGTGGTGTTTCCGGCGATCAGTGTTGGGGTGGTGGGGGAGTTGGCGCCGGTGGCTGGTGCGATCGTGGGTTCCGGTTTGGGGGCGATTTGGGGGGTGGTTTCGGGTATTGTGTGGGGGGCTTTGGGGAAGTGGTGAATGCTTTTGGGTGAAAATCCGTGAATGGGTAGGTGTTAAAATGGAGGTGTTAATTTTTGGGGCTATAATGTTTGTGGTACAAGGGTTTGAGGCGGTTTGTCTGAAAAAATGATTCACGGAAAAGCTGAAATGTATGTGGGACAATGGTTTGAAGGCAGGATGAAAATTTGGGGATTGACAGATCGAGGGTTGAAATGGTATTTTGGTTTTAGGTTCACGGAACTGAACGTTGAAAACCAAATACAGCAAGGGTTCTGGAGCGGGCG # Right flank : CACCTCTCTGAGGTTTTGGGCGGTGCTTGTTTTGAACCGCCGGAAAACCCATAAATCCCTTGTCATCAATTTGATGGCAAAATTTTACTTCGACAATTCGATATTAAGTTCGTTCACAACACGGCGTTTGAGCGGCAGAGACTTTTCTCTAGGTAGCAAGTCAAATACTTTCCGAAAGGCCTCATCGACTTCTTCAAAAGGCACTTGCCCTTTAGCGTCATAAACCACTTTTCCCGATTGATCAAGCAGCACAGTTTGAGGTACAAAACCTTTGTAATAATGGCTTGGTTCAGTCAGTTTTGGTGAAGCTTCTGGAGGCAGGGAATCGACAAAAATCGGCATAAAATCGGCTTCACGGCCGTAAAATTCCTGGAGGTTTGAGACAACGATCGCAAATTGTTTGCAGTCGCTGCTATCATCGGTGTAAAAAACTAGCAATGCGGGTTTCTGGCGTTTGAAAGAATCTGTGAGTTTAACCTTGGGAGGGACTAGGGAACCGT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATTACACTAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 2595-2346 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXIB02000164.1 Tychonema bourrellyi FEM_GT703 scaffold164_size8864, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2594 36 100.0 37 .................................... GATCGCGCTTAAGTCTAACATTGTTTAATCCTTTGTG 2521 36 100.0 34 .................................... ATGACGATACTCAGGTAGCTGTTTATAAGGAGAC 2451 36 100.0 34 .................................... ATAGAATCTCAGGACGCTCTGGGGGTGTATATAC 2381 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 100.0 35 CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC # Left flank : AAGGGTGATTTTTTGCCACGGGGGAACGTGCACACTGTGATTGAGGTGCGGCACGAGAAGTAGCAGGTAGGGTGCGTCAGTTTTGAGATTCTCAATCAGCACCGAAAGCATGATTCTGACGCACCGTTTTTTTGCTTTTGAATGTGTGCTGAATAAGAGGAAGTTTACGGAACTTTAGAACAGACTTAGGAGACTGCTGGTTTTGACAGAGGACAGTATGCGGTTTTATCCGCTATCGAGTCATACGTTGAGTCAGGTCGAGACTTGGGGTGTGGGGCCATCGATTACTGAGTTGCCGAAGTCTGTGATTATCTGAAACTTGCGAGGGGGTACGCAAATCGCTGAAATATTGATTCGGTGGTTGACCCCCTCGATATATTGCTACATAAGGGTTTCAGCAATTTGTGTTGGGGGATTTGCGGCATTTGTCAAGACAATTTTCGACCCCCTCGCAAATGGCCTCTAGACATCTTGCGCTGTATGAGGTTTAATATAGAGGC # Right flank : TCGGCTTGTATATACTATGCAAGCCTTTTTGTTGCTTAACTCGCCCTCAAATCCGCATCCAGATCTCCGATCGCCCTTGCAGCAAAAAGTAGGCGCGATCGCCCGCCCGTAAATCAAATCTATATTTTTAGTAAGGTGGGGCATTGCCCACCCTACAATTAGTTTTGATTAGCTAAAGAAGTCTCGGTAATCGTACTTTTGTCTTCATCTAGTTTCGATTCAGCCAACTTATCCAAAATCTCCACGACTTCTCTTTCAAAAGTCACCTGAGCGCGATTGGTACGCCCACCAACATAAAGTTTGCCATCCTTTTCCAAAGCCCAAATCTGTGAGTGAGACAGATAGCTCATCATCACGCTAAGCATCAGCAACCCAAAGCCAGTATAGACGATCGGGATTCCTGGATCTGCTTTAATTTGCAATCCAGTGCTGCCAACTACTTCGTCAATTGTCAGCATCACTCCATTCACTTCAACTGCTGTACCCGCGCGAACTGTAGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //