Array 1 1911-688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPEF010000042.1 Phocaeicola vulgatus strain 1001287H_170206_E1 NODE_42_length_46234_cov_56.4526, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1910 33 100.0 32 ................................. TAGCCTTCTTATGGATACAATAATCGCATTGG 1845 33 97.0 33 ................................A TATTCGGAAACAGGGATAAATTGGTGATGTTCA 1779 33 97.0 31 ................................A CCAACACCAATATTCTTGTAATTAGTATCTC 1715 33 100.0 32 ................................. TAGCATTACCAGTACCAATGAACGAACCATAA 1650 33 97.0 33 ................................A GTTTGAAGAGAAGAAGTCGAAGAAGGATTAGAC 1584 33 97.0 33 ................................A TAATTACTTGCGTTTATCAATCACTTGACGACG 1518 33 97.0 33 ................................A TTGGAAATATGCTGACCTTGTGCCTGAGCAGCA 1452 33 100.0 35 ................................. ATACCTGTTTTAATGATAAACATAATGCGACCGGA 1384 33 97.0 34 ................................C GTGTAATAGGAGAATGAGCGATTCTGTTGACATA 1317 33 100.0 35 ................................. ATTTTTACAAGAGGAGATAATAGTAGAAAATGGTA 1249 33 97.0 33 ................................C GCTATGGCAGCACGCTCTATGAGGTTATACAGA 1183 33 100.0 33 ................................. TATATAGTTTCCATTGTGCAGAAGTCCTCCCAG 1117 33 97.0 33 ................................C GCTATGGCAGCACGCTCTATGAGGTTATACAGA 1051 33 100.0 33 ................................. TATATAGTTTCCATTGTGCAGAAGTCCTCCCAG 985 33 97.0 33 ................................C GCTATGGCAGCACGCTCTATGAGGTTATACAGA 919 33 100.0 33 ................................. ATTTTTATTAATTTGGTAGACGTGATGGATTGA 853 33 100.0 32 ................................. GGGAAGCTTGCGCCGGATACATTATGGACGTT 788 33 97.0 33 ................................A ATGACGAGGTGAATACGTGTATAGACAACCATA 722 33 90.9 0 ....................A.........G.A | TA [699] ========== ====== ====== ====== ================================= =================================== ================== 19 33 97.9 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGGGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : TTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAATCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGCGTTCCAGAGTAAATATATTATATTTTTTACTATACTATTCCTTGTTGTTTATTTGTTATATTGTTGATTGTTAATGTGTTATTGTCTGTTTGTGTCGATTGTTTTTTCTTATCTTTATAAAATATATTGAAACATAAACTAACATGGAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATGGA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //