Array 1 7991455-7989652 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNTM01000001.1 Streptomyces sp. 2133.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================== ================== 7991454 28 69.0 126 ....G....CG..C....TC..C.-...T TCGTTGCGGCGGCGACGGCATCCGCTCCGTTCGGATTGTGCTTGTGCCAGCGGCGGTTCTGCTCAGTGGCATACGCCCGCCGGGCCTCGGCTTCGGCTTCCTCGGTTTGAAGGCGCTGCTGCGGTA 7991300 28 89.7 32 C..............-.........A... CCGCGGGATGCCCGTCCGCCGAGCTGCATCTG C [7991289] 7991239 28 75.9 121 .C......TA..C..A.....-....T.. TTTCGGGCCAGGCAGTTGCCTGCGAGGGGCCGTGTGGCCCGGTAGATTCAGGCGGGTGCATGACCGGCGTTCCTTGAATCACGAATCGGCAAAACGCTCCTAACGGCGCAGGTCGCGAAGG 7991090 29 100.0 32 ............................. GTCAGCATGGAGCCGAAGCGGACGTATTCGCC 7991029 29 96.6 30 ............................C GGTCCTGGCCTCGCTGGCAGCGGCTGAGCG 7990970 29 100.0 32 ............................. TAGACGAGGGCGCGCATGTACTGGCGGACCGC 7990909 29 96.6 32 ............................T CTTCCCACTCGTCCCAGTCGGACGGCAGCGGC 7990848 29 100.0 32 ............................. CTTCCCCGGAGAGCGCAGGGTCACCGAGCCGG 7990787 29 100.0 32 ............................. GCGTAGTTCCGCTGTACCAGCGTGATTCCGGC 7990726 29 96.6 32 .........T................... GGCCAGCGGTCCGGCCTGATCTCCGTGCTGCA 7990665 29 100.0 32 ............................. ACGCTCGGCCTCGCGGTAGTGCTGGGGTCCCT 7990604 28 89.7 33 ............C...........-...C GCCTGGGTGGAACAAGACCTGGGACCGCCCCGA 7990543 29 93.1 32 ............C...........G.... CTGCTGGATCTGCCGGACCCGACGCGCGTGCA 7990482 29 93.1 32 ............C...........G.... CTCAACTGCAGCATCAGCCTGGGCTCCGGCGG 7990421 29 89.7 33 ............C.............T.A GGACCTGGTCGTACCGGCCCTCGACGTCGTCGA 7990359 29 89.7 32 ............C.............T.A CGGGGGTGAGTGCCGTGGCGGACCGTACTGTG 7990298 29 93.1 32 ............C...........G.... CTCAACGCTGTACGACCCGGGAGTGCCGAGGG 7990237 29 96.6 32 ............C................ GAGACGCCGCGTGCGCACCTTCTGCCTGCTGA 7990176 29 93.1 32 ............C...........G.... GCGGGCTGTCGTCTCGTACAGGCCGGCGACAG 7990115 29 89.7 33 ............C............A..A GGCCACCCCCGAGATCGTCGCCTTCATGATGAG 7990053 29 96.6 3 ............C................ GCC Deletion [7990022] 7990021 29 79.3 124 A..G...G.C................TT. ATCCTGGCCAGGTAGTGCCTGCGAGGAGCCGTGTGGCTCGGTAGATTCAGGCGGGTGCATGACCGGCGTTCCTTGAATCACGAATCGGCAAAACGCTCCTAACGGCGCAGGTCGCGACGGGTGC 7989868 29 93.1 32 ....G.......................T GCGACCCACGCCACGCAGGTACACCGGAGCGG 7989807 29 96.6 32 ....G........................ CCCGAGCTGCGGGTCGCCGGGGCGAGGCCGGC 7989746 29 96.6 37 ....G........................ TTAGTGCATGCCGGGGGGCGGTGGCTGCTCCACCCCC 7989680 29 96.6 0 ....G........................ | ========== ====== ====== ====== ============================= ============================================================================================================================== ================== 26 29 92.7 42 GTGCTCTCCGCGGAGGCGGAGGTGAGCCG # Left flank : CCCCTTCACCTCAACTCATCGTCCCAGTCCGGGGTTTACTCCACAGCCGATCCGCTGATTTGGCCCCAGGGCCGATGGCTATCAGCTCGGTGCCGAACGAGCCACGCTGGAGGCATACGCCAACCGGGCGAGGACGCTGCCGCAGGCGGCCGGGGCGACCAAGCCGCGCTCGGTCATCACCATGCCGATCGCCGTGCCGAGCCCAAGCGGTTCGCGGCCGTCCCGTCGAACGACCCTGCCGGTGCGCCGCTTCGGCTTCGCCGCGCGGGTAGCGCCGTTCTTCTTGTCGCCTCCCGGACGGCGACCAGGGCCTGGCGCGCAAGGTCGACCCCGCTCAGCTCGCCGGTCACGCGTGCACCGCCATGGCCGTGTCGCCGTCCAGCGGGCGTATAGCAAGGTCGGGCAGCCAGCCCCTCCACGGCACGGCCGCAGTCGTCTCGGTGCGGGCGGCGGCCTGCTCGCGCAGCTGCTCCAGGCGCTCGGCCAGCAGGTACTGCGCG # Right flank : GATTCCGCCGCGAAGGCGAAGGTCCTGCGCAACTCCAGGCTGAGCGTCAACGCCTCGCCGGAACCGGTGAAGAAGGACAAGACGATCACCGTCGCAGGCGCCCTGACCCGCGCTGACTGGGAGACCTACAAGTACGGGGGCTACACCAAGCAGCCGGTGAAGCTCCAGTTCAAGACGAAGGGAACCAGCACCTACAAGACCCTCAAGACCATCACGACGGACAGCGAGGGCAACCTGAGGACGACGACGAAGGCCACGGCGGACGGCTGCTTCCGCTACTCCTTCGCAGGCACGTCCACCACTCCGGCGGTCGCCTCCACAGCGGACTACGTCGACGTGAAGTAACCCTCGGGAGGGCCATCCATCCTCCAGTAAGCGCAGAAAGCTCAGGCCGGAGACCTTTCGGTCTGGGCTTTCTTGAGCCCTGGCCGTTTCCCGGTCGGCGGGCCGGTCGGCCACTGCATCCCTTCGCACTCTTCAAGCTGATCGACGGTCTCGGC # Questionable array : NO Score: 4.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-1.04, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGGAGGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 7996235-7994001 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNTM01000001.1 Streptomyces sp. 2133.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================================================================================== ================== 7996234 29 80.0 60 .C..A.-......GA..............C CGGTCTTCTTCGTGAACCGGTCCACGGTCTCGTCGATTGGCGCGTCCCGGTCGCTACCGG 7996145 30 93.3 32 .............A...........G.... CAGCCATTCCTGGTCAGCGGCGATATCCGGAC 7996083 30 90.0 31 .............GA..............A TCATGGTGCAGCGGTAGCCGTCACGGCGCTT 7996022 30 80.0 31 ..C...G......GA....G.........T TCTCGTCCAGCAACCACTGATCGACGATGAC 7995961 30 83.3 31 ..C.G........A........C......T TCACGCAGCGGGACATGCAGTTCGCCGAGCT 7995900 29 70.0 120 ..C...G.....GA.-........GGT..T TCCCGGCCGGGCAGTGCCTGCGAGGGGCCGTGGGGCCCGGTAGATTCAGGCGGGTGGATGACCGGCGTTCCTTGAATCACGAATTGGCAAAGCGCTTCTAACGGTGCAGGTCGCGAAGGG C [7995888] 7995750 30 90.0 31 ............GA...........G.... CCGCAGGCGTAGAGAAACGAGGAGCCCGCGG 7995689 30 90.0 206 ............GA...........G.... AGCAGTCGCCGACGACGCGGGGCCAGAGGATGTGCTCTTCGTGCAGGTGGAGATGGGTTGATCCTGGTCAGTTAGTGCCTGCGGGGAACAGTGTGGCCCGGTAGATTCAGGCGGGTGGATGACTGGCGTTCCTTGAATCACCAATTGGCAAAGCGCTCCTAACGGCGCAGGTCGCGAAAGTTCGCCCTGCTGTGGGGGCTGTTGGA 7995453 30 86.7 31 .............A...........G..TT CTCCGGGGGTCACCTCCGGGCACATAGAGAC 7995392 30 86.7 31 ...T.........A...........G...T TCTACGTCGAGGACATCGGGCCGCACGTACG 7995331 30 86.7 31 ............GA...........G...A CCCTCTGGGGTGTTCCGGCGGAGGCTCTGGG 7995270 30 86.7 31 ..........T..A...........G...A CATCACCATGCGGGACTGCTACGTGGGGCCG 7995209 30 80.0 28 .............A.......A..GGG..C CGAGGGCCGCCGCGCTGTTCGGCATCGA 7995151 30 73.3 30 ...TG....CG.GA...........G...A CGGTCGGGCAGATCCGGCAAGGTGTCGCGG C [7995148] 7995090 30 73.3 30 ...T....T...GA.......A..GG...C CCCGTCCAGCAGCAGCGTGGCGGTACGCCC 7995030 30 90.0 30 ...T........GA................ AGGTTTGGTTGTACGACTTCCTGCGGGCCG 7994970 30 83.3 91 C......T.....A..........GG.... CCCGCTACGACGTGATGGCCATCGACCCGGCGTGCTCTCCGCGCCCGTGGGATGGTCCCTCGAACCCCGCCCGCACGGCCAGGAGCCGAGT 7994849 30 76.7 118 CG....C......CT..........G...A TCATGGTCTGCCCGGCGTCGGCATCGTCGAGCTGCCCGATAGATTCAGGCGGGTGCATGACCGGCGTTCCTTGAATCACGAATTGGCAAAACGCTCCTAACGGCGCAGGTCGCGAAGG 7994701 30 100.0 31 .............................. ACCTGCGCGTCCTCGACCTGCACACCCTGGC 7994640 30 100.0 31 .............................. AACGTCGAGAGGATCCGCTCGACGAGGTCGC 7994579 30 93.3 31 ............................AC CTCAACAAGTTCGCCAAGCAGCTCCGTACCT 7994518 30 96.7 31 .............................T CGAGGGCGCGGGCGAGCGCCTTGAGGTCCCG 7994457 30 93.3 31 ............................CC AAACCTGCTGGGTGGGCCGGGGCGCCCGGGT 7994396 30 96.7 31 .............................C GCGCCAACCGCAGGGGAGACGGACATGAAGG 7994335 30 93.3 32 ............................TT CGTCGGCGTATACGTGGAGGCGAACGCCATCA 7994273 30 90.0 31 ............GA...............C CAGCCCATCGGGAGGCGGATGGTGATGGCCG 7994212 30 90.0 30 .............A..........GG.... CGTCTGCTTCTCACTGGGTTCGGCGGTGAG 7994152 30 86.7 31 ............GA...........G...C TGACGAGCGGGCCCTGACGATGGCCGACATC 7994091 30 86.7 31 ..........T.GA...........G.... TGGCGGCAGCGTGAACGCTCGGTCATCGCTC 7994030 30 73.3 0 A..T........GA...........G.ATC | ========== ====== ====== ====== ============================== ============================================================================================================================================================================================================== ================== 30 30 86.7 46 GTGCTCTCCGCGCTGGCGGAGGTGAACCGG # Left flank : AGAGGTTCTCTTCACCGGATTCGGCCTGCATCAGGCAAAGGGCGGGGATGCTGAGGTGTTCGCCGGGAGTGTTTGCCATGTTGCCGGCCAGGAGGTTCAGCGTTTTGTGGCCGCCGGCGAGTGCCCTGACGGCGCTGGTGTCGAGGATGATCACGCTGCGGTGCCCCGGGCGGCCCTGACTTTCTCAGCGGCGATCTTGTAGATGTTGCCGAGCACGTCGGGGGCTTGCTCGAACTCCTCCTCGGGGATGTCCACGCCCATCATGCGGCGTACGACCTCCCGGTCGGCGGCCAGCCGCTCTGCCCGCTGGGCTGCCGTCGGCTGCTGGGCGGCGAGCGCTTCGACCAGCTGGCCGATGCTCACGCCGCGCTCCTTGGCGAGCTCGGCAAGGTGATCGCGGGTCTCCCGCTGTACCTGGATCGTCGTCGAGGCCATAGGTAGACTATAGAGGCTTTACAGTGGCGGCGCCTCCGGGAAGATGAGCCGGGCAGAAACGTGCA # Right flank : AGGACACCGCACTGGTCACGGCGAGTTCTTTAGCCAGATGCCGGCGCAGACATTGCGGTGCGGCAGCGCGTCACGGCCGCACCGCACGCCGCCAACACCGGAGCAGGTTGCCGCTCCAGCCGCTTCGCCAGGGCGGGACGCTCCACTGCCACCAGGGCGGCGGCTGCTTCGGTGCGCCAGTTTTGCGCAGGCCTCGCGTTCGTGCTGTGCTCGCCGCCCGCTATCTCAGTTCTTGCCCCGGGCGGGGTTCCGCTTCGCCCATGGCTGTTGAGCGATGCCGCGGTCCTTCATCTGCGCCACGACCTTGTCATGCCACTCGCGCAGCCACTCCAGGTCGACCGGTAACGGCAGGGTCGCCACAGTGGCGCCTTTGCGGCGGGTCAGGGTGGCATCCAACTGTCCGTTGCTCGTCTCCCACACCCTTACGGCCAACGAGGCCCGGTTGGTGTGCACAGGGACTTTAGATGCTTCCTGTTCGACGATCATGCGAGTGAGGTTGC # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCTGGCGGAGGTGAACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAACCGG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 8009830-8008808 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNTM01000001.1 Streptomyces sp. 2133.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 8009829 28 85.7 33 ...TTA..................G... GACCAAGGACGCGGCGACCAGAGCGCGCGAAGG 8009768 27 78.6 28 ....T...........T.-..CC..C.. CCGGCCGACTCTCGCCGGACGCTGAGGA 8009713 28 82.1 119 ....T....A..............G.TT GATCCTGGCCAGGTAGTGCCTGCGGGAGCCGTGTGGCCCGGTAGATTCAGGCGGGTGCATGATCGGCGTTCCTTGAATCACGAATCGGCAAAACGCTCTTAACGGCGCAGGTCGCGAAG 8009566 28 100.0 33 ............................ GATGCGCGAGCTGAACAGGGCTAGCGAGGCCAA 8009505 28 100.0 33 ............................ GTGGTGCTGTGTTGCTCTCCGATGATCCCACGG 8009444 28 100.0 33 ............................ GGGCGGCCGCGTGCTGGTGCTGCTGCCGACTCT 8009383 28 100.0 33 ............................ GCAGGCGAACGAGCGCAACGGCGACCAGCTCAC 8009322 28 100.0 33 ............................ CCGTCACCGCACGAGGAGAGAGCAGTGAACGAC 8009261 28 100.0 33 ............................ AATCCAGGTGTCCGCGAACCGGCAGGCCGACCG 8009200 28 89.3 32 ....T.......A...........G... GCTGAGAGCCCCGCGGTAGCGAGGCCCCAGCA 8009140 28 85.7 33 ....T.......A....A......G... GTGGCTGCGCCGGCTGGCGGCTAAGGACCAGCA 8009079 28 85.7 33 .C..T.......A...........G... GGCCGAGCAGAGCATGGCTGCACAGCCGACACG 8009018 28 89.3 33 ....C.......A...........G... ACGACCGCCTGGGGCAGCACGCCTTCGAGGACC 8008957 28 96.4 33 ....T....................... GTCGGGCCCTGCGCACTCTCCGCGGCCGGGCGG 8008896 28 89.3 33 ....T.......A...........G... GTAGTCGGTCACCCGCTTCGGCCGGGGCGGAGC 8008835 28 85.7 0 ....T.......A............A.T | ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 16 28 91.7 38 GTGCGCTCCGCGGAGGCGGAGGTGAGCC # Left flank : CGGATCCGCACGGAATCCAGCCAGGGGGTCACCGCCTGGGTTCATGACGGCAACACTTCCTGGGCCACGATCGTCGCTTCCGAAGCCGGCCGAACTGTGGCCTACCAGGGTGGCCCGCGGCGCTTGGCCACCGAGCTGGGAGAGGCCTGGCATGCATGGGAGACGAGCGGCGCTCCCGGTCTGTACGACTACGGCATGACACGTACTCCAGAGGAGCAGTACCTCTGGAGCAACGATCCCGACACCGGCCCACGATGGCCAACAGCCGCACCTCTGCTCGGCACTGCCAAGCAATAACCTGCGCCAGCCTGGGTGGTGCACTGCCCGGTCCAGCCACTCCTGTGAGCTCGGCTGTGGCTCCACCAGGATTCCACCAAGTGCTCCCCGTGCCCGAGGGGATGGTCCCCGCGGCGCGCAACGCAGCCCGTGTGTCGAAGGCCTGCTCCCCGCACGCGCGGAGGTGGGCCGGCGGCGGCAGAGAGACTACGAAGGCGGCGACA # Right flank : GCATGGTTGAACCGCGGGCTACAGGCCGTTGGTGTCCAGGTCGAGGCCGAATGGCTCCGGGATCCGTACTGTGGTGCCGTAGGGGTGGGGCCGTCTGCTCGTGTGTAGCCGAGTTGGCATGGCTCCGAGTACAGAGTTACCGAACGCTCTTGACGGTCGACCAGTAGGTAGAGCGGCGCCCCGTACTCCGCGTACCGACGGCGTTTCACTTTCCGCATTGGACTCGCTGGTGACCTCGACGACGAGGAGTGTGTCCGAGGGCAGCAGTGCACCAGCGCCCTTTGCGACCGCGGCGGGTACCACCGCGATATCTGGTACGTACCAGTTGCTGGACCCGGGCAGGTCGAGGTTGCCGGAGCCGGTGACGCAGTCGAGTTCGCGGGCGCGGGCTCGGATCTGGTCGCGGATCGTCTCCGCGGTCGTTTCGTGGTCCCAGGTCGGTGACACCGGCTCGATGACGCCCTCGACGATCTGGGCGCGGTCGCCGCGGATGTGTTGGA # Questionable array : NO Score: 4.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:-0.50, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTCCGCGGAGGCGGAGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCGCTCCGCGGAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [16-16] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 8011736-8011427 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNTM01000001.1 Streptomyces sp. 2133.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8011735 29 100.0 32 ............................. GCAGGCAACTTGCCGCTCATAGCAGCCCCGTT 8011674 29 100.0 32 ............................. GTGCCGCGCTGGGACGTCCGGACGTAGCCCTC 8011613 29 100.0 32 ............................. GCAAGGGAGCCTTCGTTCGCGATCCGGCAGAC 8011552 29 100.0 32 ............................. AACACCACCGCGGACGTGAACACGCCTACCTC 8011491 29 96.6 7 ............................C ATTCCTC Deletion [8011456] 8011455 29 79.3 0 ............C......G.A..GT..C | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 27 GTGCTCTCCGCGGAGGCGGAGGTGAGCCG # Left flank : TTGTCATGGTCGAGCCTCTGCTTCTCGACTCCCGCGGCATGCGCATATCCAGGGTCGCTCACGAGGTCGGCATAGGCCTCCCGCGCCATGACCTGAAATGCCGGAATGATCTTTCCGACGTCATGTAAGCCGGCCCACACACTCACCAGGCCCCGAACCTGCCCCTCGCTAAGGCCCACGGCACCAGCCAGACGCGCTCGCGCAGCATCCGTCAAAACCCGGTCCCACAGCACACCGGCAACCGCCGCAGTGTCCAGCAGATGACAGATCAACGGATACCGACGTGCCAGCCCCCGCTCCTTACCCCACAACCGCCCATCGACCACCGGCTCCGACATAGCCCACCCCCATCACGACGCTGTGACAGCAACAGGCATACCAGCGCCCACTGACAACGCCCCCACACAGCGCTTCACAGCGGTAGATTCACGCACATGCACAACCCCCGCCCCTTGAGTCAAGAAAACGCAAACCGCCTCTAACGCCGCAGGTGGCGAAGG # Right flank : CCGCTCAAGGCGGTGCGGGTGCGCAGGGGGAGCGATCGGATTTGGTCACGGTCCGCGATCGACCGGTGTGCGGCGCCGGTTGTGCGCCACGATGGCCGAGGTTGTTGTCTCGAGGAGGAATGTCCGTGGGTGACCACCGTAAGTCCGATCCGGATCCAAGCCAGGGCAAGCCGCCGCCTGGGAACTCTGACGGGAAGGTGCCCGACCCGCCGCCCCCGTCGGGAAAGCGGCGGAAGTAGGCGTCCTCCATGTCTGAACTCTGCGAGCTCCAAGGCCGCCTGGAAAGCGCCATGGAGGCCCAAGGCATCTGGCCGGCGGACTCGCCCTGGGTCCGCCGGGCCGCGCAGGATGCTCCACGGCACGCCTTCGCCCCAAATCGCGTGTGAGATTGGGACGGCGACATCTACGCCCCGGTCGACCACGCTAGCGATTGCGCTCGGTGGGCGAGCCTCGTTTACGGCGGCGTCTACGACTCCACCATCACCCAGGTCGCCGACGGC # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.52, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGGAGGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 8021298-8021760 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNTM01000001.1 Streptomyces sp. 2133.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 8021298 29 100.0 39 ............................. AACGCCCCGCGCGTGGTGCTGTTGTTGTGGACCTCGGTG 8021366 29 100.0 32 ............................. ATCGACAGCCACGACCTGGGCGAGAAACTGGG 8021427 29 100.0 31 ............................. ACGAGCGTGCCGAGCTCGCGGAGGTACTTCA 8021487 29 100.0 33 ............................. GCCGTGGTGACCAGGGAGGGGCGGGAGCGCACC 8021549 29 100.0 32 ............................. GCTATCTACGATTCCGCGAACCTGGACGACGA 8021610 29 100.0 32 ............................. GGGGCGAGGCGCACTTGAGGTTCCGGGGCGTG 8021671 29 96.6 32 .....G....................... AGGTAACGGGAGGCGGTGGCCAAGTGCTTCTC 8021732 29 96.6 0 .....................A....... | ========== ====== ====== ====== ============================= ======================================= ================== 8 29 99.2 33 GTGCTCTCCGCGGGAGCGGAGGTGAGCCG # Left flank : AGCGGCTCCTTGAACCCGACTCCGCCGCGCAAGAGCCAGAGGACTTCGAGGACGAAGTGGTGGACCTGTGGGACCCGGTAACGGGAGCCGTGCCCGGCGGCGTCAACTACGCCGGCGCACGCGAAGAACCCGGCGCGGCAGGCCGGTGACCCATGCCGTCAATGATCACCCTGTCCGTCACAGCCGTCCCCGACCACTTGCGAGGAGCACTGACACGCTGGCTACTGGAAGTCACACCTGAGCTATACGTCGGAACGGTATCGGCAAAGGTCAGAGACGAACTCTGGGCAGCTGTCACCGACTGCACAGGGGACGGACTCTCGGTAATGGTCTATCCGACCGACAACGAACAAGGCTTCACCGTGCGGATCTCCGGACACCGCCGCCGCCACCTGCGTGACTTCGACGGGCTCACGCTGGTCGCCTTCAGCTCACCACCCACAACGGGAAAACCAGATCACGAAATTGCAAAGCAGCTCTGAAAGTGGAGGTCGCGAAGG # Right flank : GCGCCGGGGCCGGTACAAGGCGCTTTCCGAGGCGTGCTCTCCGCAAGCGCGGAGAGCACAAGGTGGGCTGGGTTCCGGTCGTCGGCCGCGGCTGCTCACCTCCGCCTGCGCAGAGAGCACCGGGCAGCTGGACGGGAACAACCGGACCGGCCGGCTCACCTCCGCCTCCGCGGAGAGCCCCGTATAGGACCACCCCCACGCGTGCGGGGAGCAGGAGTCCGGAGCGAAGCGGCCGTCACCGGAGGTGGGACCATCCCCACGCGTGCGGGGAGCAGACTTCGTGACCTGCATCGTTCCATGCGCACCACCTGGATTTGAACCACGCGGACGTCCGGCTCGGGGCCCTCTCCACCGGTCAGGGCAGGTGGAGCTGGCTGCTGGCCACGCGCCGCCGACGAGAGCACCTCCGCGGATCCAGAAACACAAAGTTCCTCAATTCCGGCCTCGACGCCAGGGACGACACCCCCGCGAGGCGGGGAGCGGAACCGCATGGTGGCCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGGGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGGGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //