Array 1 10783-9495 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXN01000019.1 Actinobacillus pleuropneumoniae serovar 2 str. 4226 Contig26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10782 28 100.0 32 ............................ TCACGACGTTCCCGGCGAATAGATTCGCGTTG 10722 28 100.0 32 ............................ CTTAGGCTTTAATAAAGCTCGAATCCTAAGCC 10662 28 100.0 32 ............................ TTTGGCTTTCCGGTCAAATTATGGCGGCGAAC 10602 28 100.0 32 ............................ TCATTTCAAGGATATAAAGATTTAAACTGCTT 10542 28 100.0 32 ............................ GTAGGCGACCCGTAGGGCTTGACATTGACAAG 10482 28 100.0 32 ............................ TAAAAAAGGGCAAGGAGCTTTTAACGAATAGC 10422 28 100.0 32 ............................ TAAATGCTTGTCAAGGTCAAGCCCTACGGGTC 10362 28 100.0 32 ............................ ATAATGTGGTATTGATTGATACTGATCCACAG 10302 28 100.0 32 ............................ TTGATAAGCACATGAGCAAATTTCTTAAACTG 10242 28 100.0 32 ............................ TCTAAAATACGTTTTAAAATTTCCCCGATTTC 10182 28 100.0 32 ............................ TATACATTCTCATAAAATAAATTGTTGCAATT 10122 28 92.9 31 .C.....................C.... AGTTAAAAAAGCAAATGGTTAAAAACTTCGT 10063 28 100.0 32 ............................ AGTTAAGGACGAGATGACGACTTAACTATAAC 10003 28 100.0 32 ............................ GAATTTATGAAACTAGCGAAACAGCTAAATGA 9943 28 100.0 32 ............................ TTACTTTCCTCATCATTCGGATCAGTACGGAT 9883 28 100.0 32 ............................ TTGCACAACGTGATTTAGAGATGGTCGCCAGT 9823 28 100.0 32 ............................ AGATAAACAAAAAATAGAAGAAATTAATATCA 9763 28 100.0 33 ............................ CTGAACCACCGGAAGGAATACTACAATTAGAAA 9702 28 100.0 33 ............................ CTTGAGAAGCAAATAAAGTGATCAGTTTATCAT 9641 28 100.0 32 ............................ TATCCGATAACCTCTTCCTTAGTTTTGCCACT 9581 28 100.0 32 ............................ TTGCCAATATCGCAAAATACGTTAAAGATCCC 9521 27 89.3 0 .....................C-.C... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.2 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAAAACACAATTAATCGGAGAAGGTTTACAAGACTATGTGCTTATTACATCGGTAACACCTGTACCGGAAGAAATAGTCGAATACCACCGTTACCAAAGGGTACATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGCAATTTTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGCACGTAAAACTCAAGAGCGGTAGCACTAAACAACATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAACCCTCTTTCGGCTTATTTAACACGTATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTATATTTATAACCCTTTTTTCCAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCTTTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTAACATTCTAAAGTAAAATAACGA # Right flank : TCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCAATAACTCAAGCGGCAATGCGAGAACTGTCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAGATCGGTTGTGATTTTTTTAGTCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //