Array 1 4940-3952 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHNX01000031.1 Levilactobacillus fujinensis strain 218-6 contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================== ================== 4939 28 100.0 33 ............................ CATGAACGTTCTTTTCCGTCTGTACCTTGTGAG 4878 28 100.0 33 ............................ TCACCTCGTACAGGCCGTTATCAGCCCAGTATG 4817 28 100.0 33 ............................ TCATCAGTCCACTTAACCCGGAGGTCTTTGAAG 4756 28 100.0 33 ............................ TTACAGGTATTTGAACGGTTTTTGTTACTCGTT 4695 28 100.0 33 ............................ CCTTTGAGTTGCTTCATGTAAGCTAAGGAATCG 4634 28 100.0 33 ............................ TAAATTTTGGCAATTAAACAAACAACAGACGTC 4573 28 100.0 33 ............................ TGCCTAAGAAAATTGTTGACTTGTCATCATACC 4512 28 100.0 33 ............................ TCATCGGGTACTAAGGCGTTCATAACTTCAGCA 4451 28 100.0 33 ............................ TGACTTCGAGGAGACTGCTGAGACCATCGCCTT 4390 28 100.0 33 ............................ TCTTAGAAGAGCTAGGTGGCTATCAAGTGTCGA 4329 28 100.0 33 ............................ AAGACTAAGTGCGTGCCGTCCCTTGGTCGGGGG 4268 28 100.0 33 ............................ TTATGAGATTTGGAAGGAGCCGAAGCCTGACTT 4207 28 96.4 33 ........T................... CTCACCATCGTGTACCGTGGCTTTGAGGGCCTA 4146 28 100.0 138 ............................ CACGGGAGTTATTCTCTAAGGGAGGTAAGCAATGAAACCTGACTACGATAGAGACGGCTGTGGTTGTGTGACACTACTCATTTGCATATTAGGTACCTGGTTTTTTGGAAGCCTGATGCTGGGATTACTTTAAACGAA 3980 28 85.7 0 ..............T.........T.TT | T [3955] ========== ====== ====== ====== ============================ ========================================================================================================================================== ================== 15 28 98.8 41 GTATTCCCCGTGGACACGGGGGTGATCC # Left flank : ACTGATTCAATCTGAGAACCAACGGCTAGCACCGGGGACTATTGTTGTGCCATCATTCCTAGCCAAGGGATTGGAATTCGACGGGGTTATCGTTTGGCAGGCTTCGGCGAGTCGTTACGCGGCGGAAGATGAACGGCAATTGCTGTACACTATCTGTTCCCGGGCCATGCACCGGCTAAGCATCATTGGAATTGGCGAGTTCTCGCCGTTACTGAGCGATGTGCCTAGTGATGAGTATGAAATGATTTAGGGTAAATAGAAACGCATGTTGCTGACTGAGAAGTCGGGGGCGTGCGTTTTTTGTTTTGGGGAGGGGGGGCAATTGAAGTTTTGGTTAGTGTATGTGTCATTTAGTGGTTTGTGGGGCAATCTTTTTCCTGATGCATTTGAGGCTAAAGCTGTTGTTAATGGGGTGATGGTACGGTATGCTTTAAGAGCAAGTTAAAGGAAATACGCAGTTTAGGAAAATTAGAATGCCGGTGTAGCAGCGTTTGTTTAGT # Right flank : CCTAGGCCATAACACATATTTTGGAACTTTATTTTATGCAGCTCGTTGCATGCACACAACACCTCAGAAAGCGTTCCCACTTTCCAACTTCTCAGTGTCAGAAGTAGCCGGTTTTGCGGTATAATGGTGGGTAATTATTTCTATCTAAAGTTGAGGTGTCCCCATGAGTGATCCCATTAATTACAATGTATTTACCCGCGCACAGTGGCGGGCGTTTTCCGATGACGCGACCTTACCGTTGACCCAAGAAAGTTTGCGGCAAATCAAGGCGTTCAACGACCGGATTTCCCTGCAGGATGTTCAGGACGTTTATATTCCACTGGTGCATTTATTACACTTAGAGTTTGACCATTACCAAAAACTCCAGCGGGATAAGGCGGCCTTCTTACAGCAGAAAAAGCACCGGGTGCCGTTTATCATCGGTATCGCTGGTAGTGTGGCGGTAGGGAAGAGCACGGCGGCCCGGCTGCTGGAAGTTTTGCTCAACCACTACTTCACGG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.68, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGTGGACACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 16857-14509 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHNX01000014.1 Levilactobacillus fujinensis strain 218-6 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 16856 28 100.0 33 ............................ TTAGATTATTTTCAAACCTATCTCCGTCAGTTA 16795 28 100.0 33 ............................ TGTCGAAGGCAATGTACGTGAGTTGAAAAATAA 16734 28 100.0 33 ............................ CTGTAGCATCTGAAATTCCTAAATCTCTGGATA 16673 28 100.0 33 ............................ CATAAAGATACAAATTACAAGTATCAAATTACA 16612 28 100.0 33 ............................ CTTGGTACCATTTGAATAAACATAAGCGGCATG 16551 28 100.0 33 ............................ CAACTTTGACACTGTTCCAACGGTTAACAATAA 16490 28 100.0 33 ............................ TACAAATCTCCGCTTCTCCGTTTGAAACATACT 16429 28 100.0 33 ............................ TAGTGCAGCTGTCGCTGCACCTTCCTCAATTGA 16368 28 100.0 33 ............................ CCGATTGGTCTCGGTTGGTGCTTTTTTTTATGC 16307 28 100.0 33 ............................ TCTCTGCGATACCACGAATTGCTTGCGTAGATG 16246 28 100.0 33 ............................ TTATGGCAGCAGTTGACTTAGAAGAATTAGTGA 16185 28 100.0 33 ............................ CAAACCGTTGCTGCTGCTAAGCAGGTCTACGGC 16124 28 100.0 33 ............................ TATATCCCGGCATTCCTTTAGGCATACGCATAA 16063 28 100.0 33 ............................ TTCTTGATCCTTTCTCTGGGGGATCAGTTAGAG 16002 28 100.0 33 ............................ TTAATATCAAGAGAACGCGAATCAACATAATAA 15941 28 100.0 33 ............................ TCACACTGATAGGATCGGCCAGGGTCTCAAAAA 15880 28 100.0 33 ............................ CTACTCCGTATGCAATTTCGGTATTTGCATCGT 15819 28 100.0 33 ............................ TAAGCGTTGGCCTGATTCCAAACCGGGGAATCG 15758 28 100.0 33 ............................ TAAATGCGTTTGTAAATTTAGCTAATCCGGTTT 15697 28 100.0 34 ............................ CTCCACCCAAGCTGTCGTAGTACTCAGCCAGTGA 15635 28 100.0 33 ............................ CGCGCAAGCTGACCAGATTTACATTGCCAACGG 15574 28 100.0 33 ............................ TTGGAAACTGATGATCAACTATGGAGCTGTTCG 15513 28 100.0 33 ............................ TTACTGTAGAATAATTTTGATAAACGCTTCATG 15452 28 100.0 33 ............................ TAATAGTTTCTGCCGGTAGGCCCTCGATATTTG 15391 28 100.0 33 ............................ CGAAAACGAGCTTGCTCCTGATACCTCTGCAGC 15330 28 100.0 33 ............................ TTTCCGCGTTGATGGTATGGATGGACGTCTTAC 15269 28 100.0 33 ............................ TGGTAATGGCACGGCCTCACTAACAGGGGCTGG 15208 28 100.0 33 ............................ CTGGTAAATTCCACCAGTCGTCAACTTATAGAC 15147 28 100.0 33 ............................ AACGAGTGCCGTGAACAGCTTGGCCGGTGGTAC 15086 28 100.0 33 ............................ TGAGCGATTTGATCCCCAGCACTATCTTGGATA 15025 28 100.0 33 ............................ TTCTGGTGTCTGCACAGTGGCCCATGTCAAAAC 14964 28 100.0 33 ............................ CGAAGACAAACTCCCATGTATTGGAAGAATGGC 14903 28 100.0 33 ............................ CTCCAAGCGGATTTGCACCAGCAGTTGTAATCT 14842 28 100.0 33 ............................ CGGCAGTTAAGGCCATGAATTCACTTGGACTAT 14781 28 100.0 33 ............................ CGCATGGAAGACTTATCGGGCGAGTGTAGCTGC 14720 28 100.0 33 ............................ TCCATCACGGCAGGAATAAGTGACACGTTGGGA 14659 28 100.0 33 ............................ TTGATTAATTGTCTTATCATCGAGTACTCCGCC 14598 28 100.0 33 ............................ TATTCATACCCACTAAGACCTTTTCTGGTGTAT 14537 28 100.0 0 ............................ | T [14511] ========== ====== ====== ====== ============================ ================================== ================== 39 28 100.0 33 GTGTTCCCCACAGGTGTGGGGGTGATCC # Left flank : GTCAAGGATACGATTCTTTCGATTGGCGCGGTTAAGTGGGGCCAAGATGACAAAATTGTACAGTTTTATCAATTGATTCAAGTGCCACAGAAGATTCCCGAGAAAATAACGGAACTTACTGGGATTACCGTTGAAATGTTGAACAAACAAGGCATTAGTCTAGCCGATGGGCTACAAGGTTTACAAAAGTTTGTCGCTGATGCCCCTATTGTTGGTTATAATCTGCGATTTGATGAAGGCTTTTTACTAGCTGCTTTTAGAAAAATCGGACAATCTGGTTTGTCGAATCGGTTAATTGATTTGATGCCGTTGGTAAAGAAGTCGAATAAGTTTTTGGACAACTATCGACTGGAAACAGTTTTAGCCGATTATGAGATTGAAAATTCTCATCCTCACCATGCATTATCCGATGCTCAGGCAACTTTCGACTTGGCAAGCAAGTTAAAGGAAAAAGGCCTTTTTTGAAAAATAGGATCCCGGTGTGACGGCGTTTCTTTAGT # Right flank : AAATGTATTGGCTGGACTTATTTCATTTGGTGGTGTTTTCTCACAGGGCTAAAAGATTTATTTCGTTTCTCCAATTTCCAAGTCTCAGTAGTGTACGCCATAAAACTGGCGGCCACTGCTTTTTTCGTTTACACGCTAATTCGGTTGGTGACTTGCTCAATCGCAAGTGCTTCGTTGGGGTTTTGGCGGGAAATGCCTATGATGGTCTCTAGTAGAGTAAGGGATGGGAGGTCAGACTCATGAGAACCACGACGCGGGAATTGTCTGGTGTGGGGATGTTGATCACACTGGGAATCGTGTATGGGGACATTGGGACGTCACCGCTGTACGTGATGAACGCGATTATTGATCAAACGGGACGGCAGACGTTGGCGGCGACACCGATTATGTTGGGGAGTATCTCTCTGATTTTTTGGACATTGATGTTGATTACGACTGTGAAATATATTTTGTTGGCCATGCGTGCCGATAACCGGAATGAGGGCGGTATCTTTGCTCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACAGGTGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 28648-26606 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHNX01000014.1 Levilactobacillus fujinensis strain 218-6 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28647 29 96.6 32 ............................C TTGCGTGCAGTATTTGTAGATGAATATTGGCC 28586 29 100.0 32 ............................. GGATTGAGGTTTAATAATCGTCTTAGACTTTG 28525 29 96.6 32 ............................C TGCTTTTGATATTCAGCAGTATTGGTAAGTTT 28464 29 100.0 32 ............................. ATACCCAATGAGTTACGGTCCCTGAAACAATG 28403 29 100.0 32 ............................. AACAGGTAGAATGAACACATATATCAAATGAT 28342 29 96.6 32 ............................C AAACGCTAAGTATCGCAACCGGCACGTATTTA 28281 29 96.6 32 ............................C GTCGCTATCTTCGTAAGCTTGTCGTTTACCTT 28220 29 100.0 32 ............................. TGGTCGACGTAGTTGCCGGCCAAAGCCAGGCC 28159 29 100.0 32 ............................. TGAGTCTTCCGGATTAATGATCGTATTGGGCA 28098 29 100.0 32 ............................. TAAACAGATTTTTGAACCAGTTCTTGTGTTTC 28037 29 100.0 32 ............................. TAGCTAAGACATAAAAAATGGAGGTATCATTA 27976 29 96.6 32 ............................C ACGTTCGATGATTGAGGTTGATGTATTGGTAC 27915 29 96.6 30 ............................A GCTGATAAATTAGGAGTATCTAAACAATCA 27856 29 100.0 32 ............................. TGACGTGGCAACTAAGTCTGATGTTACAACGG 27795 29 100.0 32 ............................. TCATGATAGTCACCGTACCAGTTGGTGGCGTA 27734 29 100.0 32 ............................. CGACTTCACTCACCAGGCGACCCGTCATCGAA 27673 29 100.0 33 ............................. GACTCATCAGGAAATGGTATGTCGCGGAAATCT 27611 29 100.0 32 ............................. GAGGCATCAGAAGCATGATGTCCTTCAAAGCA 27550 29 100.0 32 ............................. CATCATCTCCGGCCCACGTATAACTTTTGTCT 27489 29 100.0 32 ............................. TATTCTACAGTAATTCTACTCTGAAAGCGGGG 27428 29 100.0 32 ............................. AATATTAAGGATACGGGTGTTATTGCTGTCGT 27367 29 96.6 32 ............................C GCCCGCCGGTAAAAAAGGGCATAAAAAAAGCA 27306 29 100.0 32 ............................. TAATTCTGGTTCCAGCCACTGCCGACCGCTCC 27245 29 100.0 32 ............................. AAAATGATGGCGGCTATCGCGACAGCAGTTAA 27184 29 100.0 32 ............................. TTCTCGCTCATACGGCATACTATCGGGATCGA 27123 29 100.0 32 ............................. GACATTGTTTTTAGCTTAGATCACAAAACTCG 27062 29 96.6 32 ............................C ATGTATATCGAAGCGTCAACGGGATTACTACA 27001 29 100.0 32 ............................. ATAGCAGCGGCCGTTGGGGCACCGTGCCAAGC 26940 29 100.0 32 ............................. CACTCCTTTAATTTTTAAGTGTCACTGGTATG 26879 29 100.0 32 ............................. GCCGAGCAGTTCGATGGTTCAAAAGAGTCAGC 26818 29 100.0 32 ............................. TAATCGGGCTTCCTTCACGGGTGATGATGCGC 26757 29 100.0 32 ............................. CACCCTTTGGAAAGAGTTCTTGGCGCTGATAG 26696 29 96.6 32 .........G................... TGGTTAGCTTTCACGATGCATGACAAATTAGA 26635 29 96.6 0 ..........................A.. | T [26617] ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.0 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : TGATATGTCGTTATAATTGCCGGCGGAGGTTAGAGGACGGTTTTACTTGAAATTGATAACAAAAAATCGTCTGTAGTAAGAAGATACAAAATAACCTTTGACAAGTACATAAATAACGTGTATAGTTAACTATTAGAGTTTAAGAGATGCTAATAACGTGATTCAGAGAGATTGGTTAGCAAGCCGGAGTTTCTTAGATTTTAAAATGGTCCGCCCATTCACAGGAATGGGGGGCCATTTTTTTATGCAGTTTTTTAGAAATGATGACGGCCTGAACTTGATATAGGAGACTAGCAATGATGAATTTCAGATGCTGATCACGATGAAAGAACAACTAGTGGCTAATTTGAATTGGAGCTTATTTATGGTCTTAATTTACTTTGTGGGTGACATTTTATCGATTGTTAATCGTAAATTACTGAGGTATGCTAAAGAAGCAAGTTAAAGGAAAAAGGGACTTTTGGAAAAATAGAATGCTGGTGTGACGGCGTTTGTTTAGT # Right flank : AGATATCTTTACAGCAAATATGAGGCTATGTTTAAAAAGTATTGTGGTAAGAAATTAAATCTATTGCCTGTGGGAAAGGAGGAAGGTCCGTTTAGACTAAAGTAAGATTTTCACACTGGAGAAGATCTTATTTAATGTAGATTTCAAGCATAAAATGAATGTGTGTACACCAACGTTTTCATTTTTACATTATTTATAAACTACTACAAATTATTTTGTGTGTTTATTGTATTGACGTAAAACTCTTCAAATTGTATCTTAAGAATAGCAATAAGATATATAGTTGTATAAACAATAGGGAGAGCGGAACCATATAGTTTTCTAAATCACAGAAAGTGGACGATAAGGATGACAGTGGAAATATCGAGGCGTGCAGCAGCGCTGTGGGCCAAAAAACAATCAGAGGACGGTCAACAGGCATGGCTACCACTCATCGTGCATTTACTAGACACACAAAATGTGGCAAATTATCTTTTTAATCAATGGCTAAGTCCAGGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //