Array 1 44130-42510 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAYP01000044.1 Streptococcus agalactiae strain NNA003 contig64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 44129 36 100.0 30 .................................... ATGCGGTCACTCATATAAGACATCTCCTTT 44063 36 100.0 30 .................................... CCCAGTTGCAATGACTGCGCCAGAAGTCGG 43997 36 100.0 30 .................................... TAATGGTTTATCTCTTTTTTCATCTGTTAT 43931 36 100.0 30 .................................... AATTATCAATGTTTACAACTGTTTTAGTTT 43865 36 100.0 30 .................................... TAAAATCCTGAAACAGAATGGGATTGATAT 43799 36 100.0 30 .................................... AAAATCAGAACGCCTTATTTGAAGCAGTTA 43733 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 43667 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 43601 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 43535 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 43469 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 43403 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 43337 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 43271 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 43205 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 43139 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 43073 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 43007 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 42941 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 42875 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 42808 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 42742 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 42677 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 42611 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 42545 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //