Array 1 1302007-1306491 **** Predicted by CRISPRDetect 2.4 *** >NC_015436.1 Sphaerochaeta coccoides DSM 17374, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1302007 28 100.0 33 ............................ TACCGATACCATAATGAGACGAACCAGTACCAG 1302068 28 100.0 33 ............................ CCCAGTCGTGTTACTGGTTTGATGCAGTCTACT 1302129 28 100.0 33 ............................ TCTTGTAAACGCCATGCGGCTTGTGCAAGTCCA 1302190 28 100.0 33 ............................ TATTTTCCATCATCGTGGGCGCACCGTCATAAT 1302251 28 100.0 33 ............................ TGTGTTTTCTCCCGTTGTTGAAGGTGATTCTTC 1302312 28 100.0 33 ............................ TCTCGCGTTCATTTTGAAAACGAGAATGAATAA 1302373 28 100.0 33 ............................ TAGCATCCATAGCACGCGTCTGTGGGACTGTCT 1302434 28 100.0 33 ............................ CACTTTGAAAAGTGCCTTTATACTGCCTTTTGT 1302495 28 100.0 33 ............................ TTCCCTGTCACCACTGTGGATACTTTCGCCAAG 1302556 28 100.0 33 ............................ CTGCCCTTTCGTTATCGCCATCAGTTTGCCACT 1302617 28 100.0 33 ............................ TGGGATGAGCGAAGGCGCGCAGGTCCTCACTGC 1302678 28 100.0 33 ............................ CCATATGTAAAGCACCTTGACGGCGATATATGG 1302739 28 100.0 33 ............................ TATTTTACTAAGTTCTTTTGCTGTCATGATTTA 1302800 28 100.0 33 ............................ TATCGGCTTCTTTGAGAAGCTCAATACATTCTG 1302861 28 100.0 33 ............................ CCTGAACCGTTCAGGTTATCATAAAGATGTCAC 1302922 28 100.0 34 ............................ TTACGCAACGCTATCTATACGGGCGAATGGCTCA 1302984 28 100.0 33 ............................ CGAGCAACCCTAAAAGAGACTATATGCAATCAT 1303045 28 100.0 33 ............................ TTATGATTCCCGTTAAAACGCCTAAAACTGATA 1303106 28 100.0 33 ............................ TATCAGCGGGAGGCTTTGTCGGTCATGATGGAC 1303167 28 100.0 33 ............................ TTCCTGACACGGCAGGGCATCATCGGAGACGAG 1303228 28 100.0 33 ............................ CATTTCGTCAATGCCATGATGTAAAGCCCTGAC 1303289 28 100.0 33 ............................ CTCATCAACGGAGAAGTGTTCCAATACGCATCC 1303350 28 100.0 33 ............................ TCAAGAGGCTGTTCCGCAGGGGGCACAGGGAAG 1303411 28 100.0 33 ............................ TGCTGTTCAGCGTAGAATGGCCGATTTGGAAAG 1303472 28 100.0 33 ............................ CGATAATGGGAACGCTCATACCACCAACATACT 1303533 28 100.0 33 ............................ CCCGTCTTTTGAAGATATTAAGTTAGTTGGTGA 1303594 28 100.0 33 ............................ CCACGTCTTCGCATACATACATCTCCTTCTATA 1303655 28 100.0 33 ............................ TATAATATACGATAAATAACAAATATTATATGA 1303716 28 100.0 33 ............................ TAATTTAAAGTTGTCTGCATCAAACCGCACACG 1303777 28 100.0 33 ............................ CACCATACTTCTCAAGAAAAAATTCAAACATTC 1303838 28 100.0 33 ............................ TGACCTTACCCTGAAAGTGTTCGCGGTAGTGGC 1303899 28 100.0 33 ............................ CCCGAACCGTTCGGGTTATCATGAAGATGTCAC 1303960 28 100.0 33 ............................ TATGCGTATCTTTTTATCGTAAAGGAAGGGAGC 1304021 28 100.0 33 ............................ TGAGGGGTGGGCTATGCGGGGAATCTGATGATT 1304082 28 100.0 33 ............................ TGACATCGCTCTTGCTTTTGGGCTACGACGAAG 1304143 28 100.0 33 ............................ TATGACACAGAAAAAGCGGACTGGGTATGTGAC 1304204 28 100.0 33 ............................ CGAATCCTGCGCCCAGTGGTTGTGCAGTCTTAT 1304265 28 100.0 33 ............................ TACCCTTCCCCCCATTCATTGGTATAGTCGGCC 1304326 28 100.0 33 ............................ TATTGCCGGAGAGCCCAAATAATATTCTTTCCG 1304387 28 100.0 33 ............................ TAAGACCCTATTCCCCGCATGACGCAAGGGAAT 1304448 28 100.0 33 ............................ TACCCTTCCCCCCATTCATTGGTATAGTCGGCC 1304509 28 100.0 33 ............................ TATTGCCGGAGAGCCCAAATAATATTCTTTCCG 1304570 28 100.0 33 ............................ TAAGACCCTATTCCCCGCATGACGCAAGGGAAT 1304631 28 100.0 33 ............................ TTGCTGACACACTCCTAGAGAAAAGCGGACTCT 1304692 28 100.0 33 ............................ TCTCCTCCGTCACCTTTGGTCGAGTAAAGACAG 1304753 28 96.4 33 ..................T......... TCATCCACAGAGACATAATCATCTATAGGTATG 1304814 28 100.0 34 ............................ CATTCCACTGATTCCATATTTGAAAGCACGTTTA 1304876 28 100.0 33 ............................ TGCTTGAGGCTGACCGTCAGCTTTTTCGTACTG 1304937 28 100.0 33 ............................ TGGAATTGGCAAAGTATGCCTCCTTTCGAAAAA 1304998 28 100.0 33 ............................ CGCATGAATACACGGTCGCCAATCTGACAGCGG 1305059 28 100.0 33 ............................ TAGCTTGTTGTTTCAAATCTTGTCATGAGAGCA 1305120 28 100.0 33 ............................ TGGAAAGGGCGGCATAGCACGGGGGGAATACAC 1305181 28 100.0 33 ............................ TGCGTTGTCCGCCTGCGCTCCGGCATCCGCAAT 1305242 28 100.0 33 ............................ TGCGTTGTCCGCCTGCGCTCCGGCATCCGCAAT 1305303 28 100.0 33 ............................ CTCTACCTGAGCAAGCTGTGACAGCAGCTGCAC 1305364 28 100.0 33 ............................ TGAATGGGGGGAAGGGTATTTCCGGATAAAATC 1305425 28 100.0 33 ............................ TGGGTTCCCATTCCCCGTCAGGGAAGGACGCGA 1305486 28 100.0 33 ............................ TCAGGTCGGTGATGCTCTTACTGCTGGTAGCAA 1305547 28 100.0 33 ............................ TTCTTTGGCATTGCATGTAGATGAATTGATGTC 1305608 28 100.0 34 ............................ CAAGGCAAATCTTCTACAGACTGTCGCAAAGATA 1305670 28 100.0 33 ............................ CCAAGTGTCGCTCCAGTAGACATCCCTGTAGAG 1305731 28 100.0 33 ............................ CATCAAAATATCTTTGTATATAATCGGTCCAAA 1305792 28 100.0 33 ............................ TTTGCGTGATGCAGTGACAGGTGTCTCCAGGGC 1305853 28 100.0 33 ............................ CCGTTTGGGTTTGTCAACAGAAAAAGTAAAAAC 1305914 28 100.0 33 ............................ TTGCCCTTTGAGTATGCCATATGCCTCATTTCT 1305975 28 100.0 33 ............................ TCATGTACTTCTCTGGTACATCTTTATGATAAC 1306036 28 100.0 33 ............................ CAAGGAAGACATAGAGGACATGAAGCGGAAGAT 1306097 28 100.0 33 ............................ CAAAAAGCACATGAGGCTTTACGCGCGGAAGAT 1306158 28 100.0 33 ............................ GATATCAGTTCTTTCGCTTCATGGGCAACGTGC 1306219 28 100.0 33 ............................ TAACCCAAACGGTTTGGGTTTGTCAACAACAAA 1306280 28 100.0 34 ............................ CATGAAAGACTGGAGGCGAAGATGCGCGCTTTGG 1306342 28 96.4 33 G........................... TTGATGAGATTTTTGAGCCTGTCTTCATACGTA 1306403 28 96.4 33 G........................... CGGAGAGGACGGAGAACGGATCAGGCAGCTTCT 1306464 28 96.4 0 G........................... | ========== ====== ====== ====== ============================ ================================== ================== 74 28 99.8 33 CTATTCCCCGCAAGTGCGGGGGTGTTTC # Left flank : TTATACAAAGAAACTGTATGCATAGATCTTGCGTTTTCTGTGACGAGGGATCTTGCAGGCATGTATAACAAACATCGCGTTTCAGAGGAATTTAGGAATAGAATTATTGAATTGGATATCTTGGGAAATGTTGCACGTGACATAAAATATGTTTTAGGAAAATAAACATGGTTGTAGTTGTTGCAAAACACATCCCTCCTGCTGTTAGGGGACGGATGAAATTGTGGTTCATCGAACCACGTCCAAATGTCTTTATATCTGGCATTACCGATTCTGTTGCTACACAAGTCATCACATATCTTTTTTCCCATTGTCCTATTAGTTCCGAGTTATTGGTTTTTCAAAAAATCCCTTCTCCTCCTTACTACAAGATTTGGAGTAAAGGAAATACTAATAAGATGACTATAATTTCTGGTCTTCAGTTGATTCTTGAAAAGACAGAGTAGGAAAAAAATATAATATGTAGTATTATTATCTATACTATATTACAAGATGTTGCT # Right flank : CCGTTCTGCCTCACAGAGAAGCGTTTCCCCGGCAGGAAAGTTACTTTTCTGTAGCATTTCATGAGATGACGCATAGTACTGGTTCTAAAAATAGGCTCAATCGTCCAGAGCTTGCAATTTATGCCCAAGATATTCATGCCCGTGCAAAGGAAGAACTTGTTGCGGAGTTGGGAGCCGTTGCCTTATGTGAAAAATGTAATATGCGATATGCCCATCAAGAATCCGCTGCATATCTAGATAACTGGAGCAAATCTTTTAAGTATAGGGAAGTATCCCTTCAAAATATTTACACATCGGTTTCACCGGCAGTCCGTTATATCACAGCTGAGACACAGAAAGAACGGCAGGACATCCTCAAACGGACTGAACCCCTTATACCGGAATGGAAAAAAATCGTCGAGAAGGCAACTGAAAAAACAGTGTCACTTTCTCAAACTCAAAAAAACCATTCACCAAGAACCGCAATACGGGGAGAACCAGATGAGTAAGCTCATAGTCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGCAAGTGCGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1322003-1319989 **** Predicted by CRISPRDetect 2.4 *** >NC_015436.1 Sphaerochaeta coccoides DSM 17374, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1322002 28 100.0 32 ............................ TGTATCCGTGACGGTAAAGGTGATGCTGTCGG 1321942 28 100.0 32 ............................ ACTACCGCGCAGTGGTCCACACGCACTTATAT 1321882 28 100.0 31 ............................ ATCCTTATAAAAGCACTCAAGGCTAACTACA 1321823 28 100.0 32 ............................ GCGCTGACAAGGGAAAGGATTTGGTTGACGCT 1321763 28 100.0 32 ............................ GTCAAAAAACTGCACAACAGGAACACGGGCAG 1321703 28 100.0 33 ............................ GCTTCCGTCGGTCCGATGATGACCACCGATCCC 1321642 28 100.0 32 ............................ AGAACTACGCAGGCCATGAAGAATTTCATCAT 1321582 28 100.0 32 ............................ ACAGTCTTCTTGCTTTCTGCCTTGGCAGGTTG 1321522 28 100.0 32 ............................ TCTGCAATCCGATAGCTGGCGCCTCCCGCTAT 1321462 28 100.0 32 ............................ TGTCACAGAACGCCCAGAGTGCCAAACAGGAC 1321402 28 100.0 32 ............................ TAAGGGATCTTTTCCGCTCGGAAAAACTTAGC 1321342 28 100.0 33 ............................ TTTTTTCCTCGAACTTCAAGCTGGGCGTCGGAA 1321281 28 100.0 32 ............................ ACGCCAAGACGTTCAGCAAGTCATACGACAGC 1321221 28 100.0 32 ............................ CGGAAGGCCCGGTGTCCCCCTTGTCCCCCTTC 1321161 28 100.0 32 ............................ CGAGGCGCAGGCTCTGGGCGCAGACCGTGAAA 1321101 28 100.0 33 ............................ TACCACATCGATACCGTACAAAACGACCTCATC 1321040 28 100.0 32 ............................ AAATCCGCCGCAGGCAGGAGTCCTTCATCTAC 1320980 28 100.0 32 ............................ TTCTTGCTTTCTGCCTTGGCAGGTTGTATACT 1320920 28 100.0 33 ............................ TTGAGAAAGCGACAGGGAAAAGCATCGGGAAGT 1320859 28 100.0 32 ............................ TCGGGCTTGAGGACTACCAGCTTTACTTGTTG 1320799 28 100.0 32 ............................ GACTCAACGGACAGACCGCTCCCGATTGCCCC 1320739 28 100.0 32 ............................ ATTGGGAAGGTTCAGCCGGGGCAACGGCGTGG 1320679 28 100.0 32 ............................ ATGAGAAGGCGAGCAGGGAAAGCAGGATGGAT 1320619 28 100.0 32 ............................ TCACCATCACCGAGGATGTCGTCTTCACCATG 1320559 28 100.0 32 ............................ GACAAAAAGTTGATATGCATCGAGGAACTGTA 1320499 28 100.0 32 ............................ TTGAGATAGAGGACAATCTGTATCTCCTGAAT 1320439 28 100.0 33 ............................ GGCCGCAGACGCAAGGAATCCTTGACGGCCTGC 1320378 28 100.0 33 ............................ CTCCGGCTTCCAGTGCGAACCTGTCGGCGAATC 1320317 28 100.0 33 ............................ TGCAAGGGAGTCCGAGCGGTTGGCCTCCCAGTC 1320256 28 100.0 32 ............................ TTGACGAATATGACGGATGGAAGGACAACATC 1320196 28 100.0 32 ............................ TATTGTATATGCTCGCTCATAGATGCTCATCT 1320136 28 100.0 32 ............................ TACAAAGACCTGATAGACACTATGCTAGGGGA 1320076 28 96.4 32 .......A.................... TCACAGGCGATGCTGTCAAGTCTTTGCCAACA 1320016 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.9 32 GTATGCTGCCGCATAGGCAGCTTAGAAA # Left flank : GTGTGGGAAGTAAGTTACGTGTTTTTGCTGAGTCAGAACAGAATCTTATTTCCTTGGATGCGAAGCGGACCTTTGCGGATTTTGCTGATTATGTGCATGTGACGGGAATTGGGAATATTCCCGACGGCTGTACTTATGCGTTGTATAAAAGGTTGCAGCCGAATGGAAATCTGCCGAAAATTGCACGAAGGAAAGCTTCTCGTGAGGGACTGTCTTATGATGAGGCTTTGGCTCGTCTGAAAGTACCCGGTTCAAATAAATCTTCGGATAATTTGTTTCCTTACATATATATGAAAAGTTTGAGTTCTCATCAAGACTTCTGTCTTTTCATAAAAAAGGAACTTGCTGAAGTTTCTCGTGAGTTTTCTTTTAGTACATATGGGTTGAGCGCGATTTGCACCGTCCCTGAATTCTAGTGGTAATATAGAAAATCAGAAGGTTAAATCCGATTTTGTTTTTTATTTCTATATAGAGTAGGAATTTGTGTTGATTTTTTTTGT # Right flank : TCCTTGAATGTATTATTTCCTGCCGTACAGGCAGAAACTGCTGAACAAAAATTGAGCTGACTTCAAACACTTGATTAGCCGTTGAATAGCCAGAAACTTCCGGCTGACCAATGTAGCTGGTCATACTCGCATGGAAGATGATGGTGCTTTTGTTGCGGGTCTTCATGTGGGGAACAAGTTCCTTTGTCAAAGCAAACGCTCCGACAAGATGTACGTCTAATACCGACCGATAATCTTCCACTGTCATTTCTTCTATTGGTTTCTTGCAGTGATTTCCCACATTGTTCACAAGAATATCAATTGGTCCGTGGTCGGCAATAATCCCCGCTACAACTCTACCAGTTTCATCTGTATGAGTAATATCAAACTCACAATATGCTACCGCTTCCTTATAAGCTGGAAGCTTTGCAAAGCTGGATATCTAGGATTGGTACGGACACTGGCGCGATGGGTGGGCATAGACTCTTTTCCTTTGATATGCCTTCGACTACGTGTTATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATGCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //