Array 1 21179-22136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABZEC010000006.1 Bombilactobacillus apium strain DCY120 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21179 36 100.0 30 .................................... ATGAGTATAGACTTTGAGGGTAGTAGTTAC 21245 36 100.0 30 .................................... TTGATTTACATATACACGCGCGATTTTCCA 21311 36 100.0 30 .................................... TGAAGCCAATTGATAAGTCTCACTAGAACA 21377 36 100.0 30 .................................... TGAAGCCAATTGATAAGTCTCACTAGAACA 21443 36 100.0 30 .................................... TGCCAATACTTTTGTTGTGAATGGACGAAA 21509 36 100.0 30 .................................... ATACTATCCTCATTAATATCCGTGCCCGAG 21575 36 100.0 30 .................................... TTATTCTAATAATCCAATGGAATGTCTTAA 21641 36 100.0 30 .................................... TTTTGTTCTCGACTATCAACAATTAATTTT 21707 36 100.0 30 .................................... TGATTATGCTTTGCTGAAGAGAGAAATTAC 21773 36 100.0 30 .................................... TCAATATTGTTGGGATAGTTGAGCTGGATA 21839 36 100.0 30 .................................... AAGTAGTGCTAGTTGCTATTTAGCCCGAAA 21905 36 100.0 30 .................................... ACATTATTGTCCGTCCCACTAGGGTGACTA 21971 36 100.0 30 .................................... AAGTAGTGCTAGTTGCTATTTAGCCCGAAA 22037 36 100.0 29 .................................... TCCTTGGGTAAGATTGTCTTTAGATGGGA 22102 35 75.0 0 AC.........T.........C.CC...-A.C.... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.3 30 GTTTTTGTACTCTTAAAGATTTAGTAATGGTAAAAC # Left flank : ATTACAGGTCCAAATCCAAAATAGGGCGCAGCCAACTTGGTTGGTACTTTATAATTTGGAAAGTTACTTGGCTCCCCAGCAACAGCGACTATTATTGGAAAAATTACAGCGTTTAACCCAAGTAAGTAATTTGAAAGTTTTATATTTAGCGGCAAATTTAAATAATTTATCTTTTGAGCCGGATGATTGGGAAAAAGTAGTTTTGGTAAATAAACTTTTTACCCAATTGCCACCAGCCTCTGTTTTACGACAGTCGTTAGAGCTACACTACCCTAGTGGCTGTACTTGGAGTTTAGCCGAGTTAAATTCTTCATTGCAGCGAGTTTTGCCATTAGTTGGAACGAAGAATTCCGTTTACTTGCGGAATCGGGATCTGGTATTATTAAAGTTAATGAGTGACTTGTTGGGAGTTGAGACGTCAATTGACCTTCAAGATGATTCATTAACCAGTGCAGAAACCCAATTTTTACACTCCCAGTAATCTATTTGGGAAATTTGAG # Right flank : CCGCATTGAGATCTTTGGAACTTGTTCAGATTAAATTTGTAATTTACCATGATAAAAATAAAAAATGAGTTCTGTATTCTTATAGAGTTTATCATTATCAATATGATTCGGTTTAAGTTTAATAATAAAAGAGGTGGATTACGATTTGACGAAATCGCAACCCACCTCTTTTATTAAGTCTTTTCTTCTACCATTGCTAAATCTTTAAGAGTACAGAAACAAATATCACTCTTTCTCTATAATTCTAGCTTAGTGTTTCATTGTATACAAGAAGTAACTCATTTTTTTGACGATGTTCTGAGTTTATGATACCATTCTTTAAAAAAGTGATATTTAAAAGAAGGAAAAAGAAGGAAAAAGAAGGAAAAAGAAGGAAAAAGAAGAAGCGATGATATTGAAAAAAGCACTAGAATTGGCTGCAAATAAGTGTAGATATTTGAATCCTTTGGTTGTATTTGTATATTATACTGCTAGAATATTTTTGCTATTTTATTAAAAAT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTTAAAGATTTAGTAATGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 179500-176779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABZEC010000002.1 Bombilactobacillus apium strain DCY120 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 179499 27 92.9 33 ..A.........-............... TAGATGCCACTCTAAGCCTCTAACTCTTGGCGC T [179485] 179438 28 100.0 33 ............................ TAATTCCGGCAACGCCACCATCTTGGATTTTAC 179377 28 100.0 33 ............................ ATTTTGCGGTAGCATGCGGCTGGTGAGCTTTGG 179316 28 100.0 33 ............................ TTTATTCTTTATCAAGTTTGCGCAATCATATTT 179255 28 100.0 33 ............................ TAAATTTTTAAGTCGTGAAATTAAGTCTCAAAC 179194 28 100.0 33 ............................ CTCCGGAACATATTTTTGTAAGGATTTCAATGA 179133 28 100.0 33 ............................ TCCTATCCCGCCCACTTATCGTCCCAATGCGAT 179072 28 100.0 33 ............................ CGGAGTCGATAAATCTTCGGGAGTGAGTGACGA 179011 28 100.0 33 ............................ TTGGTTCAACCAAGATATTACCTCATTTAAATC 178950 28 100.0 33 ............................ TTATAAGAGTATCAAGAGCTACTGTCGAGTAAC 178889 28 100.0 34 ............................ TGATTATCATATTTATTCGAATTATGAGCATTTA 178827 28 100.0 33 ............................ TTAACATTGACTTAATTTCACGTTCTTCTTCAA 178766 28 100.0 33 ............................ TACTTTGTAGCGCTTCAACAGCACTTTTTGAAG 178705 28 100.0 33 ............................ CAAACGTAACGGAGACAAAAGATAAGTATTTTT 178644 28 100.0 33 ............................ CGGCTGCACCGAATCGTGCAAGAACCCCTTCAA 178583 28 100.0 33 ............................ CAGGAATTGACAAGGCTAAAAATGCCCCACCGA 178522 28 100.0 33 ............................ TTGATTATTCATTAAATCATTCTAATGTAATTA 178461 28 100.0 33 ............................ TTACGAGCAGACGATCGCCGGGCAAAACGCCAT 178400 28 100.0 33 ............................ CATTTTATTTTGATATTGAAACTTTATTGTATA 178339 28 100.0 33 ............................ CTTAATGTGCTTATTTAATTCAGTTGTTTGGTC 178278 28 96.4 33 .......................A.... TAAAATTTTGATAAGGTAAAATAATACTTTGAG 178217 28 100.0 33 ............................ TCACTCATATCAGCGAGTAGAAGTACGTCAAGG 178156 28 100.0 40 ............................ TTGCTTTTTGAAAAATCAATCATTGGCTGTGCATTTAACA 178088 28 100.0 33 ............................ CCCGAAGCTAACCAGCCGCATGTTGCCGCAGAA 178027 28 100.0 33 ............................ CAATAGGGACGGTTTAAAACGTTCATATAATGT 177966 28 96.4 33 .............A.............. CGTCTTGGCTACTTTTAAGTAGCTCCACCCAGC 177905 28 96.4 33 .............A.............. TGTTTTGTTCTGCAGTAATTGGCTCACCACAAG 177844 28 96.4 33 .............A.............. TACGGTTGATTATTGCAAGGTGGGAGACAAGCC 177783 28 96.4 33 .............A.............. TTAGAACCTGATGAGGATTATCTCCTCCGAAGT 177722 28 96.4 33 .............A.............. TATTTGCCAAGAATTAAAGAAAGATTAGACGGA 177661 28 96.4 33 .............A.............. TCAAATTGGTGGATATGATAAAGATAAAGGTCT 177600 28 96.4 33 .............A.............. TATTGGTAGCGACAATGTCCAAGCCACCATTCG 177539 28 96.4 33 .............A.............. CTTTCATCCAGTTTTCGATATAATCATACATCG 177478 28 96.4 33 .............A.............. TATCAATAAATTCATCATATCCGACGTATTTTA 177417 28 96.4 33 .............A.............. TTAGAACCTGATGAGGATTATCTCCTCCGAAGT 177356 28 96.4 33 .............A.............. CTTATAAAGTGGTCAATATTAGAATCTGCTAAA 177295 28 96.4 33 .............A.............. TTGTTTGCTAGCTGCTTAATCATTTTCAAGTAG 177234 28 96.4 33 .............A.............. TAAATACCATTTCTATTTGCGCAACAACGACGA 177173 28 96.4 34 .............A.............. TTAACTTACTTGAACATGATCAACCTACCGGATT 177111 28 96.4 33 .............A.............. TGCAACGTGGGGTTGCTAACGCGATTAAATTAG 177050 28 96.4 33 .............A.............. TGTTTTCGTTAGGTAGAGTTCTTTTTTGATCTA 176989 28 96.4 33 .............A.............. TTCCCAAAGATTATTACTCTGCTCATTTTCACA 176928 28 96.4 33 .............A.............. GGCATTCATTCCCGATTGAGCCTCAGTACCAAA 176867 28 96.4 33 .............A.............. TCGTTCTGTCGAAAGTCAAAATACGCAAATGAA 176806 28 89.3 0 ............C....A........C. | ========== ====== ====== ====== ============================ ======================================== ================== 45 28 98.0 33 GTGTTCCCCGCGTGAGCGGGGGTGATTC # Left flank : CAGCGGTTACCAGAACCCTTATTGGTGGGGCAAGATAATCAGTTAGCAGGATTTTTATTAAAATTACCGACAATTGATCATCATTTTCAAGAAATTGGCGCTCAAGCTTTTCGTCTGGTAACGCAGACTTCGGAGGCGAGAAGTAAAATTGCTATGCCGTCTGAATTTTTGTTGGGAGACCAGCGGAGTACACCAAAATAGGGATTTTTGTTAGAATTAAAATTGGGTGATGGTCGGGAAGCCTAGAGTCTTAGCGAAAGAATGCTGGATTAGTACCATTTTGATCTGGTGGTCAAGTGATTAGGAGAATCTAGATTTTATTTTAAAAATTGCGGTATGCTTATTGAGGCAGATGAATTTCTAGATTACTTAGTTGACTGGCTAATTTTAGAATCGAACTTTTAAAGTGTCGGTAATAGGTATCGGGTATAATTAATCAAACTCATAGAAAAAGCTAGTTAGTGATTTTTAGAATGCTGCTCTATCAGTCTTTTTTTAGT # Right flank : TAAAGGTCATTTGCACGGTCATATTCTCGCATAAGCGACACTTAATCCATCCAAAAACTCCTTCCTAAGCAGGCAAGTCTTTCTTGTCTTCTCAAGCAGGAGTTTTTTTGTTTATATTATTCAAGTTTCGCCACTAGGTCTTCTCCACTAGATCTTCGCCGAAATTCTTAAAAGCGATAATGAATCATACCTTGATATTCCTGCATTAGATGCTGGTTTTGCGCATCACCGCCATCTAGATTAGTGGAGTAAAAGACAGGAGCATCACCATCGCTTCTTTGGACCAGTCTTTGGCAGGCTTCGACCACAATGTTGTTCAAGATTGCGGCACCAATGACGGTCGAAGTCGGACCCACTTTTTGCGGGGCTCCTTGTAGCTGACAAGCAGCGTCGCCGATGGAACCATGATTATCCAAAACCAAATCAGCAATTTCAAATAAACGTTTTCCAGAAGCATGACGACTCGCTACGGCTTGAGAATAGCTGACGTTAGTCAGGCC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGGTGATTC # Alternate repeat : GTGTTCCCCGCGTAAGCGGGGGTGATTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //