Array 1 850807-851554 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015564.1 Pasteurella multocida strain USDA-ARS-USMARC-60713 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 850807 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 850867 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 850927 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 850987 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 851047 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 851107 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 851167 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 851227 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 851287 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 851347 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 851407 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 851467 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 851527 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.4 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2076926-2074017 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015564.1 Pasteurella multocida strain USDA-ARS-USMARC-60713 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2076925 28 100.0 32 ............................ GTGCTGCCACTTGGCTCGGCAGACGGCAAGTT 2076865 28 100.0 32 ............................ ACTGGTAGCGCGCCAATACTCTGTATTTTTCT 2076805 28 100.0 32 ............................ TCCATAAGGTCGCTTGTCGCAACCATTATTCT 2076745 28 100.0 32 ............................ TTATCCGTCACCTTCACCATGTCGTAATGCAC 2076685 28 100.0 32 ............................ GTCGGAGCTTAGGACGGGGGAGAGTATCGTGT 2076625 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 2076565 28 100.0 32 ............................ ATGACTGCCGCGCTTGATAATTGCAACAGCAA 2076505 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 2076445 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 2076385 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 2076325 28 100.0 32 ............................ AACAGCTCACCTTGGGGAACCACCTGAAAAAC 2076265 28 100.0 32 ............................ ATATCCTCACCGCTATAATGTGGTAAATCTAA 2076205 28 100.0 32 ............................ ACTACGGGAAATACCCAAATATCCTGCGGATT 2076145 28 100.0 32 ............................ ATATCCTCTACTGTTAATTAGTTGATTATTTA 2076085 28 100.0 32 ............................ GCGACCAATCAGGGACACTCGTATCACAGAAG 2076025 28 100.0 32 ............................ TGTTAGCTCACCGAAGCTACCCAGTGCACCAT 2075965 28 100.0 32 ............................ ACTACAAGCCAGCGACGACAGTTATAATTTTA 2075905 28 100.0 32 ............................ AAATTAATAAAATTGTTGTGCGATTGCGTGAG 2075845 28 100.0 32 ............................ ATTACCCCTACAAAACGCATAACATTGTTAAA 2075785 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 2075724 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 2075664 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 2075604 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 2075544 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 2075484 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 2075424 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 2075364 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 2075304 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 2075244 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 2075183 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 2075123 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 2075063 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 2075003 28 100.0 32 ............................ TTTTTTACATCTGCCATTGCGCTTTCAAATTT 2074943 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 2074883 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 2074823 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 2074763 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 2074703 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 2074643 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 2074583 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 2074523 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 2074463 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 2074403 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 2074343 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 2074283 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 2074223 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 2074163 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 2074103 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 2074043 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 49 28 99.3 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //