Array 1 4394093-4391748 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075256.1 Klebsiella pneumoniae strain SZP4-9-2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4394092 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 4394031 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 4393970 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 4393909 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 4393847 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 4393786 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 4393725 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 4393664 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 4393603 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 4393542 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 4393481 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 4393420 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 4393359 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 4393298 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 4393237 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 4393176 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 4393115 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 4393054 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 4392993 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 4392932 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 4392871 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 4392810 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 4392749 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 4392688 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 4392627 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 4392566 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 4392505 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 4392444 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 4392383 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 4392322 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 4392261 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 4392200 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 4392139 29 96.6 32 .............A............... GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 4392078 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 4392017 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 4391956 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 4391895 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 4391834 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 4391776 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30068-31188 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075257.1 Klebsiella pneumoniae strain SZP4-9-2 plasmid pSZP4-9-2-tmexCD, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30068 29 93.1 32 ............TG............... TAACTTTACCCCGGATCCTGATGAACCTGTAC 30129 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 30190 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 30251 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 30312 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 30373 29 96.6 25 .....T....................... AACATCAGTGGAAATCCACTGCGGC Deletion [30427] 30427 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 30488 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 30549 29 100.0 32 ............................. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 30610 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 30671 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 30732 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [30737] 30794 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [30799] 30856 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [30861] 30918 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 30979 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 31039 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 31100 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 31161 28 86.2 0 ..........A.....T.....-.....A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 95.1 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //