Array 1 5300-6609 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWJ01000009.1 Salmonella enterica isolate STY19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5300 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5361 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5422 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5483 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5544 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5605 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5666 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5727 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5788 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5849 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 5910 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 5971 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6032 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6094 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6155 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6216 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6277 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6338 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6399 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6460 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6521 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6582 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22741-24705 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWJ01000009.1 Salmonella enterica isolate STY19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 22741 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 22802 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 22863 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 22924 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 22985 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 23046 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 23107 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 23169 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 23230 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 23291 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 23352 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23413 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23474 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 23535 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 23596 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23657 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23718 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 23779 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 23840 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 23901 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 23962 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 24024 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 24127 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 24188 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 24249 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 24310 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 24371 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 24432 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 24493 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 24554 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 24615 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 24676 29 96.6 0 A............................ | A [24702] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //