Array 1 128433-126574 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOGH01000009.1 Escherichia coli strain MOD1-EC5147 MOD1-EC5147_9_length_198055_cov_60.2538, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128432 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 128371 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 128310 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 128249 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 128188 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 128127 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 128066 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 128005 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 127944 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 127883 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 127822 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 127761 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 127700 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 127639 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 127578 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 127517 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 127456 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 127395 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 127334 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 127273 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 127212 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 127151 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 127090 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 127029 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 126968 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 126907 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 126846 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 126785 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 126724 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 126663 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 126602 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 155076-154132 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOGH01000009.1 Escherichia coli strain MOD1-EC5147 MOD1-EC5147_9_length_198055_cov_60.2538, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155075 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 155014 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 154953 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 154892 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 154831 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 154770 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 154709 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 154648 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 154587 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 154526 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 154465 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 154404 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 154343 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 154282 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 154221 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 154160 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //