Array 1 9792068-9791381 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049289.1 Bradyrhizobium sp. 6(2017) strain 1S3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================================================================================================================== ================== 9792067 23 100.0 34 ....................... CGAATTCACGAAAGCCAAATCGAAATTGTTGATG 9792010 23 87.0 40 ..C..C..A.............. GCTATCCTGGAACCTCATTCCGCTGCCGCCATTATTGGTA 9791947 23 100.0 34 ....................... GGTGTCGTGGAAGACCAGAAAACCGTTCTCGATA 9791890 23 82.6 34 ..TC.......A..C........ CGCGTTGAAGAAATCCATGAAGAAGTTGTTGCGG 9791833 23 91.3 34 ...C....A.............. GTTGTCGCCGAACTGGAGAGTCCAATTATTGGTG 9791776 23 91.3 46 ....C.........A........ CGTGTTGGAGAACCCTATTGCGCTGCCGGTAAAGCTGTCGTTGACG 9791707 23 91.3 34 .........C.........A... GCTGTCGGAGAACGAGAGCGTGCCGCTGTTGTTG 9791650 23 91.3 49 ..C......C............. CGCGTTGAGGAATTGGATTTCGGACGGCGCGTGGTCGGTGATGCTGTTG 9791578 22 78.3 152 .....T...C....A-.....A. AACAATGCCGGCGCCATTGAACGTAAGTGTCCGACCGAAGAATACTTCGCCAAGGGTAAACGTATAGGCTGAAGCCCCGGCATTGAAAGTCCAGCCACCGACGCTGGTGCTCGACGCCGAAAACGACAGGCTTGAGCTGTTCGTCACTCCGA T [9791559] 9791403 22 78.3 0 ...-.....G.....AT...A.. | G [9791385] ========== ====== ====== ====== ======================= ======================================================================================================================================================== ================== 10 23 89.1 51 ATGGTGGCGTTGCCGGCCGTGCT # Left flank : CGGATAGTGCGAGCGAGCCGGTGTCGGCCTGCACCGTCCCGCCATTGCTCCCGATCTGGACCGCACGGGACGAGGTGAAACCGGCGCCGCTGACCTCCAGCGTGCCGCCATCGAAAATCAATCGTCCCGAGAAATCCCCAAGATTGGCATCCCCCGAAACAGAGAGCGTGCCTGATGAAAAGGTCGTCCCGCCCGTATACGTGTTGATTCCGGTCAGCGTCAGCGTGCCGGTGCCAACCTTGATCAGCCCGCCGGTCCCGCTGAAAACGCCGGAAACCGGAGTGATAACGCCGGAAAATGTCGTCGAGAGGTCATTGCCGCCGACCGTCAGGGTATTGGCGCCGAGCAGGATGTTGCCGCCCCCTTCGATCGACCCGGCCGTGGTGCCGCCGGTCGTGAGGCCCGAAATGTCGAGCGCACCGGTCCCGTTCAGGATGAAGCGCGCGGTGCCGCCGCTGGCCGTGTCCTGAATAGAAGTCGTGCCACCGCTGTTGGTCGTG # Right flank : GTTGCCGGTGTCCAGTTGGCGACGTTGTTGTAGTCGGCCGTCCCCGGGTTGGGTCCACTTTCCGTAGGGTTGAGAACCCAGGTCGCGTCCTGAGCCGCGGCCGGCAGGCCAGTCACGAATAGCGCCACCGTCGCGAGCAACCCGGCACGCAACCAAGCCAGCGTTCGTCGCGCGCACACGCCGTGCTGGTCGGGCACCACAAAAGTTCCCACTGCATTCCCCTGGAGTCACCGCGAAGCGCCCCGCGCGCAGAGTGCAGGAGTCCTGGTCGTCCAGCAATGAAACTGCGCCCCTTCCTGCGGTTTGCTCTCGCGCGTTGCGAATAAACCACAGCTTGAGGTTTAGTGCACAGAGTGCCGAACACACTTCACCTGTTCCAGTTGCGCCGAGCTGTATGACCGGCACCGGGCTTAACGGGGCCATCACGATGCGACGCCGACGCCCCAGGCACACGATATTCCACACTCCCGTCTGCTACTGCGGCATGAACCCGAACGCCT # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGTGGCGTTGCCGGCCGTGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //