Array 1 34541-32315 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYWS01000031.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTU977b NODE_31_length_57891_cov_21.6419, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34540 29 100.0 32 ............................. GCAGCATTATATCCTGTCAATACTGGGTTATT 34479 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 34418 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 34357 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 34296 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 34235 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 34174 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 34113 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 34052 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 33991 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 33930 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 33869 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 33808 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 33747 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 33686 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 33625 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 33564 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 33503 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 33442 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 33381 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 33320 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 33259 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 33198 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 33137 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 33076 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 33015 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 32954 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 32893 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 32832 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 32771 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 32710 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 32649 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 32588 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 32527 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 32466 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 32405 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 32344 29 96.6 0 ............T................ | A [32317] ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 52674-51303 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYWS01000031.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTU977b NODE_31_length_57891_cov_21.6419, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52673 29 100.0 32 ............................. GAATGCCGGAGATTACCGGCTCCCCCCTGTCG 52612 29 100.0 33 ............................. ATTCGAGCCGATTTTGTCACGGGCCATGCCTGC 52550 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 52489 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 52428 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 52367 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 52306 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 52245 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 52184 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 52123 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 52062 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 52001 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 51940 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 51879 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 51818 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 51757 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 51696 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 51635 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 51574 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 51513 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 51452 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 51391 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 51330 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //