Array 1 2183-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORZV01000238.1 Xanthomonas fragariae strain PD 6880 isolate PD 6880, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2182 28 100.0 32 ............................ AGACGGTACAACTGCATACGCTAGAGGTATAG 2122 28 100.0 33 ............................ GTCATCGTGACAACCGAATACCGTGGTGTCTTC 2061 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 2001 28 100.0 32 ............................ TTTCAGATCCCTCGCCTGGGTGGCCTACTCGT 1941 28 100.0 32 ............................ GTCCATGCGGCCGGCAGCCAACAGGCTGCGAA 1881 28 100.0 32 ............................ TATGTCGCTGAGGGGTGATCCATACCTAACCC 1821 28 100.0 32 ............................ CTGGCTGCAACCGCTACTCCGTAATAACTAGG 1761 28 100.0 32 ............................ ACCAGGTCCCGGCCCTTCTGGGAGTTCACTGC 1701 28 100.0 32 ............................ AATGAGCAATAACTTTTGCGCTAGTGTTCATC 1641 28 100.0 32 ............................ ACATTATCTTTTCCGCGAATCAAAAGCTTAAT 1581 28 100.0 32 ............................ TTCCGGGGCAATCCCTTTACGCCTTCTTGGCC 1521 28 100.0 32 ............................ ACCAAACGAACTGGTCCAGGCTAGGATCCGTT 1461 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC 1401 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA 1341 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC 1281 28 100.0 32 ............................ TGCAGATGCGCGCGACGAATATCGGACGTGTC 1221 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC 1161 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA 1101 28 100.0 32 ............................ GATTTCACTGATTGATCTGGACACTGTGCAGC 1041 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG 981 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC 921 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT 861 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 801 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 741 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT 681 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 621 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 561 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 501 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 441 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 381 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 321 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 261 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 201 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 141 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 81 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AAATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //