Array 1 420411-422513 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCJY01000007.1 Salmonella sp. zj-f82 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 420411 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 420472 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 420533 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 420594 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 420656 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 420717 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 420778 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 420839 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 420900 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 420961 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 421022 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 421083 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 421144 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 421205 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 421266 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 421327 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 421388 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 421449 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 421510 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 421571 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 421632 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 421693 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 421754 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 421815 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 421876 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 421937 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 421998 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 422059 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 422120 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 422181 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 422242 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 422303 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 422364 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 422425 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 422486 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440146-442127 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCJY01000007.1 Salmonella sp. zj-f82 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 440146 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 440207 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 440268 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 440329 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 440390 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 440451 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 440512 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 440573 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 440634 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 440695 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 440756 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 440817 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 440878 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 440939 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 441000 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 441061 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 441122 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 441183 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 441244 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 441305 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 441366 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 441427 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 441488 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 441549 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 441610 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 441671 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 441732 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 441793 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 441854 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 441915 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 441976 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 442037 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 442098 29 100.0 0 ............................. | A [442125] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //