Array 1 2904-2352 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZBN01000018.1 Prevotella copri strain iT2120 NODE_43_length_19704_cov_43.5889_ID_85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2903 30 100.0 36 .............................. TACAACAGGACGGCAGTTAAACAACTCAGGCGCAAG 2837 30 100.0 35 .............................. TACAACACCCATTTTTCACTGTGCGCTACACGGAA 2772 30 100.0 36 .............................. TACAACTTTTTCCTGCCTCGTTAGTCCATCCTCAAC 2706 30 100.0 35 .............................. TACAACCGACAACGAAAAGTTTAGATTAAGAAGAA 2641 30 100.0 35 .............................. TACAACGTCATATTTGCAAAGTTAAGATAATACAG 2576 30 100.0 35 .............................. TACAACAGTACATGAAATAGGCAACAACATGCCAG 2511 30 100.0 35 .............................. TACAACACTTATTCAAAGACCACTCATTTTGTTGG 2446 30 100.0 35 .............................. TACAACGCAAAGTTCCAAAAGTAACACCATCTTCT 2381 30 96.7 0 ..........................T... | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 99.6 35 GTTGTGGTTTGATGTAGGAATCAAAAGATA # Left flank : TGTTGGGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACCCTTACAAGAAAAAGTAATCATTTTACAAGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACGGAAGTGCAACGGCCGCTATTATTTCGTAGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACGTTTTGCAACGCTTACAGGTGTTAGCGGTGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACACCCCTCACAATATATAAATAAGTAGGGTGTCCAGTTCCATGTTCTCGTTTTTGATTATGTTTTAGCAACTTAGCACACTGTAAATCAGTAAATTAAGCACAAAATATAAGACAAATTTAACTGTCAAAAAGTCTGATGTAGATTCGCACAAGATTATAGTTTATTTAGTGAATGATTATCAATGACTTAGATGGTTATTACATTGTTTTTGATACTAAAAACTGGAACACAGAACTGGACACCCTAATAAATAAGGTAACGA # Right flank : TATTATATACACGAGAATGGCATAGGGGCTGGCGCAGTTTCTGAATATCTTGGAATATAGGCAAGAAAGAGTCTTGTTCTCCACGGACTTCAATCTTTTCAAAAGAAGAACGGAAAAGATAAAAGTATCTCTGTCAGTATATGATAGTGCGGTAAAATGTATTGAGGAAGTGGAATGTGGCAAAAGAACTCAGCAAAACTATTCTTCTGAACTAAGAAACACCATTTGCCCAATAGATAAGAAAAACAATGCTGATGTGACGATAAGGGCCAACACGCCGTAGATTGATTGGGGATTGTTGACACAGTATCCTATGCAGGCAACCCAAACAGCGAAGGACAAAAGGCTGTTGTCACCCAACGCTCATATTTCTTAGAGTGCTTCGGGGGAGTATCTTCGCCTACTACTTCAATGCTAACGATTTCTACCTTTATTTCATGTTCGGGCTTGTTCGATTCTTCGTTGTTGTTTGCTGCGTCTGATATGCTGTTGTTGTTCTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGGAATCAAAAGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATGTAGGAATCAAAAGATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 3594-3173 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZBN01000018.1 Prevotella copri strain iT2120 NODE_43_length_19704_cov_43.5889_ID_85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3593 30 100.0 35 .............................. TACAACACCTGACCAGTCAGCATGATGCCAATTTC 3528 30 100.0 36 .............................. TACAACAGTTTGCTGCATGCCGAGTGAATCAAATTC 3462 30 100.0 35 .............................. TACAACTCATCTGCTACCGATAAGCGACGTGTTGG 3397 30 100.0 35 .............................. TACAACCCTTACAAGAAAAAGTAATCATTTTACAA 3332 30 100.0 35 .............................. TACAACGGAAGTGCAACGGCCGCTATTATTTCGTA 3267 30 100.0 35 .............................. TACAACGTTTTGCAACGCTTACAGGTGTTAGCGGT 3202 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 100.0 35 GTTGTGGTTTGATGTAGGAATCAAAAGATA # Left flank : ATATTATTCTGGAGAAATAAAAAAACTTTCCTTACCTATTATGACATGACTGAAGATAGACTAAATGCTTATCATATAATGTGGTTATTTGTGTTTTTCGATTTACCTGTTACTACGAAAAAAGAGATGAAGGCTGCTTCTCTTTTTCGTAAAAACTTGGAGAAAGATGGTTTCTCTATGATGCAATTTTCTGTCTATATCCGTCATTGTGCATCAAGGGAAAGTTTGGAAGTGCATGTAAAACGGGTAAAATCTTTGCTTCCGGAGGCTGGAAAAGTAAGTTTGTTAAGTGTAACAGATAAGCAATATGGAGATATCTATAACTTCTGGGGTAAGCCCAAAAGTATTAATAAGAGTAAAATATCGAAAAAAGTTATCAGCGAACCTATTCAATTGGAGTTTTTTTAGTACTTTTGCATTAGAAATTATATCCTACTCACCATTTCTTATTAGATAGAGTGTTTGTTATGCGCTGAAAATCAGTATGTTCAAATCTGTAG # Right flank : TACAACACCCCTCACAATATATAAATAAGTAGGGTGTCCAGTTCCATGTTCTCGTTTTTGATTATGTTTTAGCAACTTAGCACACTGTAAATCAGTAAATTAAGCACAAAATATAAGACAAATTTAACTGTCAAAAAGTCTGATGTAGATTCGCACAAGATTATAGTTTATTTAGTGAATGATTATCAATGACTTAGATGGTTATTACATTGTTTTTGATACTAAAAACTGGAACACAGAACTGGACACCCTAATAAATAAGGTAACGAGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACAGGACGGCAGTTAAACAACTCAGGCGCAAGGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACACCCATTTTTCACTGTGCGCTACACGGAAGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACTTTTTCCTGCCTCGTTAGTCCATCCTCAACGTTGTGGTTTGATGTAGGAATCAAAAGATATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGGAATCAAAAGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATGTAGGAATCAAAAGATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //