Array 1 1532871-1531915 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386569.1 Methylobacter luteus IMV-B-3098 MetluDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================== ================== 1532870 29 100.0 34 ............................. CAAAGCTGGCCCAGGATGATAGGCACGTTATTAA 1532807 29 100.0 32 ............................. TCGTTAATCATCCCGGACCACATGAGTTTATT 1532746 29 100.0 32 ............................. CATCTAAACGCCCTATTAAACGTAGGGCGCAT 1532685 29 100.0 32 ............................. TTTGCTGCTTGGCCTGCCTTATCTGATCGATT 1532624 29 100.0 32 ............................. CAGCTTGAATTTGAATTGGATGAAGCTAAGGA 1532563 29 100.0 32 ............................. AATGCGCGGCAATGATAGATAACGCTCAGTCA 1532502 29 100.0 32 ............................. TCGCAGGGCCCGGGACACTTCAGGATTTTAAA 1532441 29 100.0 32 ............................. CATTCATGAATCACAGATAAAGGCTAAGTTAT 1532380 29 100.0 32 ............................. GGCAGACGGTAACGCCAAAGCCAAAGGAAAGC 1532319 29 100.0 32 ............................. CCAATTCGACAACAACATTAGCGCAGGTAAAA 1532258 29 100.0 33 ............................. CTGACTGGAGTAACGCGCAAGAAAGTCAAAGCG 1532196 29 93.1 31 .............T..............A CCTTGCGGCGATTGAGCATTCAAATTGCCGG 1532136 29 72.4 101 ..T..T......TT.....A...A..T.A AACCGATTTAATCTTTTTTTAATCACTTTTTATTAGAATATCTCCCGGTTTACGGACGGGGTTGAGCTGGCGTATTTCGGCGGCCTGATCTCCTGTGACCA A [1532132] 1532005 29 82.8 31 .T..........TCT.....C........ TAGAAACACCTGAAACGGCAGATAAGCAGTA 1531945 29 82.8 0 ...........ATC.........A....A | G,T [1531917,1531942] ========== ====== ====== ====== ============================= ===================================================================================================== ================== 15 29 95.4 37 CCGTTCCCCACGAGCGTGGGGATGAACCG # Left flank : AAATCATTCCCACCATAGAGGATGTGCTGGCGGCCGGCGAGCTGGAGTTGCCGAAGCCGGCCGAGGAATCGATCGCGCCCGCCATTCCTAATCCTGAGAGTATCGGCGATGTTGGTCATCGTAGTTGAAAACGTGCCGCAGCGATTGCGAGGCCGACTGGCCGTCTGGCTGATCGAAATCCGCGCCGGCGTTTATGTCGGCGATTTATCGGTTAAGGTCAGGGAAATGATCTGGTCGCAGATCGAGGAAGGTATTGAAGAAGGCAATGCCGTCATGGTCTGGTCCACCAATACCGAATCAGGTTTTGACTTCATGACCCTGGGCAAAAACCGCCGTCTGCCGGTCGAGTTCGACGGCCTCAAACTGGTCTCTTTTTATCCTGCGGAAGATCAGAAGGATGAAAATGCTCTTTAACAATTCGACGATAAAAAATCGGCTTTTTATTTGGTGGAAAATAGGAAGCGATTATTTCGCTTAATTAACAGTGTGTTAAGATAAGT # Right flank : AATCGAGCCGAGTACGCCTGGTTGCCAACCGAAAATGCAGGTTTCCTTCGTCCATAGGAATAAACTGTTCTACGAGGCTTAGGCTGATATATCATCAGTAAACATATTCTCCGCAACGAAGGGGCGGACAGGTTGATAAATTCATCAACGCCGGAATGATCGGATACCGCCCAGGCCCTCGGGTACAAACAGATCAAAAATGAATTAATCTCGCCTGTACAAAAATATTGCTGGCCGAATACAAGAATATTCGAACTTTCTAAGAGTTGCTGAATCATTGCAATGTATCCGATACAATATTTTCTCTCTACACTAAAATGCGACAAGAGCCTGTTAAACCCGCCAGAATTGTAACTAAATGATTTATCCTAAAGATTTTATCGAAACGGCCGAAGGGCTGATTTTTGCCGTGGTGGCGCAACCCCTGGAGCAGGGCAAGGTGCTGTGTTTTTTGCGTTACGTCAAGGAAGCCTCGGGCTGGAAAAAATACGACACTGCCG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACGAGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 237321-238690 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATYJ01000014.1 Methylobacter luteus IMV-B-3098 MetluDRAFT_scaffold2.2_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 237321 28 100.0 33 ............................ CTGCGTTCACTATGAAAGCAGGATGGTAGAAAA 237382 28 100.0 33 ............................ TAAGGCCGAGGTTGCCATATTCTTTGATGTGGC 237443 28 100.0 33 ............................ TCTGTTTAGGTTGAATGAGGCGGCGATAGCTAC 237504 28 100.0 33 ............................ TAACCACGCATCTTTTAATGATTGGTTGCCAGC 237565 28 100.0 33 ............................ TTCTTTTGCTAAAGCAGCGGCCTTTTCTCCGGC 237626 28 100.0 33 ............................ TGCCTGATCAGGACCTTTATGAGCCAAGAATAT 237687 28 100.0 33 ............................ TTGGACAGCGCATTAGGTGCAAGGATGAGAGGC 237748 28 100.0 33 ............................ CACTATCGGCAACATGGGCGCAGCATCGGGCAG 237809 28 100.0 33 ............................ CGTGCGGGTATTCAGAAACAACGTCGGCAGCGT 237870 28 100.0 33 ............................ TGAGCAAAGACTATTCGGTAATGCCCTGCCTCA 237931 28 100.0 33 ............................ TACTATGTTCACGGTTTCGGATTTCCCGGAACA 237992 28 100.0 33 ............................ TCTAAGAGCAAAATTAACCCGCTCATCTGCATC 238053 28 100.0 33 ............................ GGCTACACGCATTTAGATGCGCCCTGGGCTGAG 238114 28 100.0 33 ............................ CAGATTTTGACCGGCGTCGAGGTGCTGGAAAGT 238175 28 100.0 33 ............................ CTTGGTGTACTCTTCGCGCGACTGGCCAAGCTT 238236 28 100.0 33 ............................ TGGATTCGCTGATTGATAAATACAATCAACTGA 238297 28 100.0 33 ............................ CGTACTGAGTTGGTTCGCCATTCAGCACGCCGC 238358 28 100.0 33 ............................ TAGCTTCCTAATCCGGCAGATATTAAACCAAAC 238419 28 100.0 33 ............................ CATGATGCAGCAGGACAGCGGGCAGCAATATAT 238480 28 100.0 33 ............................ TTGGTCGCGTCCATGTTTTTAACGCGCAAGCGC 238541 28 96.4 33 .............A.............. TGCCGACCGCCTCACGCGCGGCGCTGACATTGG 238602 28 100.0 33 ............................ TCACTTGATAATGTGAAAAGAGATTTGGGCATT 238663 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.7 33 GTCTTCCCCATACGCATGGGGGTGTTTC # Left flank : GTGTATTGATCTGGCGTTTGCATTAACGGTCGAGATGGCCGGACGCTATAACAAGCACAAGGTAGCAGAAAGTTTTAGGAAAAGAGTGATAGAAATGGATTTGCTAGCCTGTATCAGTGCCGATATTGAAGAAATGCTAGGAGGTAAAAGTGCTCGTCGTGATAGCTAATGATCTGCCGCCTGCGGTCAGAGGTCGAATGAAGCTCTGGTTTGTTGAGCCGCGTCCCAATGTGTTCGTTTCCGGTGTGAAAGACTCGGTAGGTAAATCTGTGGTGGATTATCTGTATCAGCATTGTCCACCGGAAAGTGGCTTGATGATTTTTCGTCGCATCAATAAAACACCAGGTTATGAAATTCTCGGTGTTGGCGATACCCGACGGAGTATTATCGAAATTTCTGGCTTGCAATTAGTGCAGGAAAAAGAAGGAGAAGCTCTGATTATTAATGACCAAAACAGCATATCTTGCGATTGATCTTCATACTCACCACAATTTGTTGGT # Right flank : GTAAGAGACGAAGCAAAATACTTCGCAAAGCAAGCAATAGTATCGAGATATCTAGGCTAACCAGCCAGCTTATGTAGTGCATAGGCTGGCTTTTTTCTACGCCGGGGACTTATTCGGTTAGAAAATTTAAAAGTTGGACAAGTTGTTAATATTTCCCATTGAACTAAGGCCAAATGATGAGATGCTGTTTGAATTCAGGTCAAATGATGAACTGTTGTCAAAAGAAGAAAAACTGTCGTTGCTATGCAAATCAAAGCCATAAGGATTGCCAGCAACATCAACTCCTGAGTAGTTACTAATCATGGGCAATCCAGTTGCGGGGTTGATGTTTCTTTCAAACAAACGATCAAATAAATCGTTTTTGCCAAAACGATTACCAGCAGTATCAAAACCAAACATGTCGCCACCAATCATAGGCAATCCAGTTGCAGGATTTAAAAGAACTATTTGGTTTTCGTCAAAAGGATTTTGGTTATTTTTAAAAGAGTTAATCGATAACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCATACGCATGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //