Array 1 180752-183600 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPAA01000003.1 Marininema halotolerans strain DSM 45789, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 180752 37 100.0 37 ..................................... TGCTACACGGTATTTACGGCTAGTCACTGCCGCATCT 180826 37 100.0 36 ..................................... CAATTACGGATTTTAGGGTTTTGGCTGCTAATCGGT 180899 37 100.0 34 ..................................... GTTATCCAACCGCGCATTCTCAAACTCATCAGGG 180970 37 100.0 37 ..................................... AAGCTAATCTCAAAAGGGAAGTGATAAAAATGGAGAC 181044 37 100.0 35 ..................................... CTTTTACTTGATGTAGTGTAGGGTCGTGCAGTTTT 181116 37 100.0 39 ..................................... CTCTGATACAGAAGTCACATACACCAACTGGGCTGAAAA 181192 37 100.0 38 ..................................... GCAATTTCCAGCCACTTTATTGATATTCATAGTTTATC 181267 37 100.0 37 ..................................... GATTTCTTAGGCACTTTAAGAAATGCCTCTTTAGTAT 181341 37 100.0 38 ..................................... TACGGGTGATAAACCCTTCTTTCACCAATTCTTTTACA 181416 37 100.0 38 ..................................... ATTTCTTAAATGAAACAAGCGGAAGGGATTTGAACATC 181491 37 100.0 35 ..................................... TTATTGACCCTGTGCCCAACTTGGTGACCGCATCA 181563 37 100.0 36 ..................................... TACTTGTGATCTCTTTTGGTGATACAATGGGGTAAA 181636 37 100.0 36 ..................................... ACCTCTCCCACCTGGGAGGCGGTGCTCTCCTGAGTG 181709 37 100.0 36 ..................................... ATGTTTGGTAAAACTACCGGTATTCCTAGCGCTACC 181782 37 100.0 37 ..................................... GATGAAAGGAGGTCGGTTAGGTGGTTAATTACAAAGA 181856 37 100.0 36 ..................................... TGACCTCGGCTTCTACACCCGCATCTTTAAGCCGCT 181929 37 100.0 40 ..................................... TACTTGGCTGTCTCGCTGTCCAGGTCATCCCCGTTGTTGA 182006 37 100.0 37 ..................................... AGCTTGAACGCCAGGAGCGATCTCCTTCCATGCCGCT 182080 37 100.0 36 ..................................... CGGTGCCGTCTGCTGTTGATGTTTCTTGCCCGCGCG 182153 37 100.0 36 ..................................... GAATGATCAAATTTATTTTATTTTGGCGTTCTATAA 182226 37 100.0 37 ..................................... TTCTTTCTCACTTGTACCCTCCTCGATTGTTATCACT 182300 37 100.0 37 ..................................... TTTTGAGTCTACTCGATCTTGCAAGATCCATGATGAG 182374 37 100.0 39 ..................................... ACTAGTTTACTGTTTAGCGGTTGTCAAAATCCGGAGGGG 182450 37 100.0 37 ..................................... CATGGACGACATGTTACAATCATCCATTCATTCCGCT 182524 37 100.0 37 ..................................... GCGTTGTGGGCTACCCAAGCTCTTCCCGTTTTTTTCG 182598 37 100.0 37 ..................................... GCTACCCGTTTCGCTAAGTTCGTGACCGTGGTAGTTT 182672 37 100.0 36 ..................................... GAATTAGTTCCTGTTCCAGTCTTAGAAATTCTCAAA 182745 37 100.0 36 ..................................... GTTTGTCCGCCCAGGAAGCAAAAGTGCTTCTAGGCA 182818 37 100.0 37 ..................................... TGATGAACTAGGCATTTACCAATCCCTTGATCCGTCG 182892 37 100.0 35 ..................................... GTGTGGGAAACTGCTTTTATATATTCGTCAATTGT 182964 37 100.0 39 ..................................... ACGATTAAAACGGCATACTGGAACGGATCTACATGGAGT 183040 37 100.0 36 ..................................... ACCTCTCCCACCTGGGAGGCGGTGCTCTCCTGAGTG 183113 37 100.0 37 ..................................... CGTTTTGGTTTCCTTTGGGCGCACCCCTTCTCCGTTT 183187 37 100.0 34 ..................................... AATGAGGCATCATCCGATTTTAAAACGATTCGGG 183258 37 100.0 36 ..................................... CCAACAAGATGCACAGGTACGGGCTGGGATTAGTGC 183331 37 100.0 46 ..................................... GTGAGGGGCGGCATAAGAGGAGTTATCTCCATCTTTGGAGCATTTT 183414 37 94.6 38 .......A.............A............... TATCTCAATAGTGTCGTTCGCAGGCTCCATATCTTTAT 183489 37 100.0 38 ..................................... ATCTATAATGAGTATCTCCCCTCACGTTACAGTTTGGA 183564 37 83.8 0 .......A........................TTTGT | ========== ====== ====== ====== ===================================== ============================================== ================== 39 37 99.4 37 GTAACAACGTAATGCACCTCAGTAAGAGGATTGAAAC # Left flank : AGTTAGGTCATCCTTTGAAGCTGCCTGCGTCAAGAGAGTTGTAGGAGCCGGTTCGCTTTCGAATCGATAAAGCCCTCAGTTCGATGACCGTTAGGGAGAGAGAGGTGTATGAATTAAGCCGAGGAGAGGGTTTTACCTCTGTGGAGATTGGAGAAATGTTAGCGATAAGCGAGAGGGCTGTTCGTAAAATGATTCAGCGTGGAGAGGAGAAGATCAGAGGCGCTAAGGAAAGTAACCTGTTTCTTGTCAATGGTGAAGGGTTATAAGTGCATAGGAGCGTATTCATAAAGAATAGGAGTTTTGACGTATTCTGCGAACACCCCTAGCGTCGGAATAGACCCAAGGGGTGTTCGCAAACGCTGTATACGTGATGGAATAAGGGATAGAGCCATTGTCAGATATCTCTTAGCGGAGAAAAAGTAATGAAAAGTGGAGTTTTGGAGGAGGTGTTCGCAAAATGATGAAGAATAGTATATATGGAGAAGGATACAGCGCACGCC # Right flank : TACACGCTATGCCACTATATAGTGAGGGAATCTTTACCCTCGCCCACGGGTCGATCTCTCCTGTGCCCTTATATCATCAATGTGCCACCTTCGGGTGTTTTTTTTGTTATTGCCACGTTGGAATTTGAGGATCGATGATAAGTGAAACAAAAAAAACTTGAATAAGAACATTTGTTCTTATATAATAGATAAAGAACTCTCCTCAAAAGGAAAGCTTTTACCTCTGTCGAATAACTATAAAGGCAGAGGGGGAATAAGTATGACATATAAAAATGTATATTTTCATAAAATGAGAATGTATAAGGCAAGCATTATGAAGAATGGTGATAGTGCCGATTCGTATAGAAAGGATTACAAAGAAACTAAACAATTAGATGAAATTGTTTTTTCTCTATTGGAAATAGATGATGTAAATACCGATGATAAAGATATAAAAAACCAATATAAATGTATTCGGTTGGGAAGAAATGAAAATGCTGATGTTTTTGAACTTCTTTGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACGTAATGCACCTCAGTAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 1224-452 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPAA01000019.1 Marininema halotolerans strain DSM 45789, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1223 37 100.0 36 ..................................... CTGTATCCACTCCCGTAATTGTACTTCTAAGTCCGA 1150 37 100.0 34 ..................................... AGTCGTTGGGGTAAAGATGGTCGCCACATCTTCG 1079 37 100.0 37 ..................................... ATACAATAACCCCGGACGGTTAGATGTCGACTGGGTT 1005 37 100.0 36 ..................................... GGAGAAATAACACTTAGTGAATTGTACTCTCTTATA 932 37 100.0 38 ..................................... ATTGATGCAGCAAACCGTCTAGCAGATGAAGGGATTGA 857 37 97.3 36 .....................T............... TATTAAGGTGAATACCCCTTGTTCTTCCTCGGAGAA 784 37 91.9 37 .......A.T...........G............... ATACAATTGAGCTACACCTAAGCTTTACCACGGCCTT 710 37 94.6 34 .........T...........G............... AGTTTGAACAGAGGTATAAGAGAGTACAGTTCGC 639 37 100.0 36 ..................................... TCGTGGTAATTTGCAATATCAATCTTTTTCATCTAA 566 37 97.3 41 .........T........................... TGGACTGGCTCATATTCATAAATAGCAAATCCATGATTTGA 488 37 75.7 0 .....G.A.T...........T..........TTTGT | ========== ====== ====== ====== ===================================== ========================================= ================== 11 37 96.1 37 GTAACAACGCAATGCACCTCAATAAGAGGATTGAAAC # Left flank : AGTTGGGTCATCCTTTGAAGCTGCCTGCGTCAAAAGAGTTGGAAGAGCCCGTTCGCTTTCGAATCGATGAAGCCCTCAGTTTGCTGACTGTTAGGGAGAGAGAGGTGTATGAATTAAGCCGAGGAGAGGGGTTTACCTCTGTGGAGATTGGAGAAATGTTAGCGATAAGCGAGGGGGCTGTTCGTAAAATGATTCAACGTGGAGAGGAGAAGATCAGAGGCACTAAGGAAAGTAACCTGTTTCTTGTCAATGGTGAAGGGATATAAGTGCATAGGAGCGTATTCATAAAGAATAGGAGTTTTGACGTATTCTGCGAACACCCCTAGCGTCGGAATAGACCCAAGGGGTGTTCGCAAACGCTGTATACGTGATGGAATAAGGGATCGAGCCATTGTCAGATATCTCTTAGCGGAGAAAAAGTAATGAAAAGTGGAGTTTTGGAGGAGGTGTTCGCAAAATGATGAAGAATAGTATATATGGAGAAGGATACAGCGCACGCC # Right flank : TACACGCTATGCCACTATATAGTGAGGGAATCTTTACCCTCGCCCACGGGTCGATCTCTCCCGTGTCCTTATATCATCAATGTGCCACCTTCGGGTGGTTTTTTTCTATGCTGAAACTGGAGCGACGGATGCATTTCTCTTTAAATGTAAAATAGTCCTTTTAGTCTATACCGTCTATAGGTTCATACCAGATAAAATAGTACCACCGACTAATTCTTAGGAAATAGAGGTGGTTATTTGAGGTTTTTAAAATCATTATGGAAAGTGTTTCGAAGCAAAAAAGGTGCGGAAACGGTTGAGTACGTCATCATTATGTGTCTTGCGGTTGCTTTGGGTGGTGCGCTGGTATCCGCGGTTAAGAGTGAGCCCGTTCAATGTAAGATGAAACAAGTCATTGAACAATCTCTCCCAATGGAATATAGCGGGGATAAATCAGAGTGCGGGGAATTAGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACGCAATGCACCTCAATAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 17684-19122 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPAA01000007.1 Marininema halotolerans strain DSM 45789, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 17684 37 100.0 38 ..................................... AACATTTTAAGTTCTCCATGTAAACAAAACCTGTGCCC 17759 37 100.0 37 ..................................... TTCGGTAGGCTTCAGTCAAACACAGTTAACCAAAAAA 17833 37 100.0 34 ..................................... CTTTCGGAAGAATGCGGTGTTTCAGCTCACCGCG 17904 37 100.0 39 ..................................... TCGTATTCAAGATGTTGTTTTCCTTCATAAGTGCCACGA 17980 37 100.0 36 ..................................... TCCAGGGCAACTAGCCTTGTCAATACAATACGTTTT 18053 37 100.0 38 ..................................... GATTTCTCACGCTTTTTCCTGGCCGCTAGTTCTTGTAA 18128 37 100.0 35 ..................................... TATGTCGTCTTTGCGACCAAGGAAGTGCAGAGCAG 18200 37 100.0 36 ..................................... CAGAATATGGCGAATTGGTATTTGATACGGTAATTA 18273 37 100.0 38 ..................................... CTACTTGGATCATCTCTTGTTTCTCTAACCACGATAAA 18348 37 100.0 37 ..................................... TCTCTGACATCTTGCAATTACGAGTAGGGGATATGGT 18422 37 100.0 38 ..................................... CCATTGTGAAGTTTCTTGATGATTCTTCTACGCAATGG 18497 37 100.0 35 ..................................... GATCGCACAGCAAGGAATGCCGATGGGACCGCGGC 18569 37 100.0 38 ..................................... TGCTTTACGGTTCAAAGGAAGGCGCCACCCTTTTTTTG 18644 37 100.0 36 ..................................... GGGGACGTTGACGGGGTATCTATCGTGTCCCAGCGT 18717 37 100.0 37 ..................................... TTGTTGTTGAACTGGGTGGAAGAACAAAAGCAACGCG 18791 37 100.0 38 ..................................... TAATAACTACAAAAAGGCTTGCGCGGTATCCCTTTCTG 18866 37 100.0 35 ..................................... GTTTGACAATTTTGTCCTTACGCTGTCTGCAAATT 18938 37 100.0 39 ..................................... GGATTGTCCTTTCTTTCGGATCGATAATTCTATCGGCGA 19014 37 94.6 35 ...........................A........T GCTTTCAATTAGAAGTAGAAAACCCGCCGAAGAAT 19086 37 97.3 0 .................................T... | ========== ====== ====== ====== ===================================== ======================================= ================== 20 37 99.6 37 GTAACAACCAAATGCACCTCAGTAAGAGGATTGAAAC # Left flank : GGGATCTTCGCATGGATGATGACAAATCAGGTAACCGAGGGTAAAGGAATCATGTGCACAACGATGCACCGCAGTAAGGGATTAGAGTTTCGGGTGGTTTTTTTAATTGCCGTTAATGAAAATATACTCCCACCTATCTCGGTTCAACGGATGGCTTCAGATGAAAAATCGAGGGAAGAGATCGATAGATTAGAACGCTCACTACTCTACGTAGCTGCCACCCGGGCTCGAGATTGTGTGCATGTTACATCCTATGGAACAAGTAGTATGTTGTGGCCAGTAAAGAATTAGAAGCTGGGACGACTTGTGTTTGCGAAGACCCCCAGCGTCGGATTAGACCCAAGGGGTGTTCGCAATCGGTGTATGCCATACGGGATAAGGGATGGCGCCATTAGCAGACTTCCCTTACAGAGAAAGGAGGATGGAAAAATGGAGTTTTTGAAGAGGTGTTCGCAAAATGGTGAAGAATAGTAAGTGTATAGAGGGATGGAGCTCACGCC # Right flank : CGTCTTGGGTGGATCAAACAGTTATTATTCCGTTCGTCCCCCTGGGGTATTGAACTTCATTGGGTTCCTGATGTTGCTTTTTCTTTGTGTGGAATTAAAGGAAACAACGGAATCGGCGATGCCATATGGGTAGGATGTATGAATTAGCAAAGGGCAAATTGATTTGACTAGCGGGCTAATCCCATGCCAAAGAAGAAATTTGGAAAGCCATAAGGGAGTACCTCACATACGTTTTGATGAGGGGGAGCTGGGGGCCCAGTTCTCTACTCTACTTACCCTTAAACGCTTACCACATCTAATTCTCCGCTTGGTCAATGGCAAAGTTCTTTTTGCCCCTTACATGCCTGTTTGTTTCAATAACGGGTTAATCAACATGCCTGAACTTTTGACTATATGGAGTTGGATGGCGATGATGATAACCAGATGGCAAAAAACGAACGAAATTACAAATGGTAAAATCATCGTTCGTTTTTTCGTTGACGGGTGGAGGTGGTGCTGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACCAAATGCACCTCAGTAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //