Array 1 9435-11592 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKGD01000019.1 Lacticaseibacillus paracasei strain FAM22280 FAM22280_scaffold_0019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 9435 32 100.0 33 ................................ ATTGTATAACCCCCTAGCTACGCCTTATCAGCT 9500 32 100.0 33 ................................ TGGCTTAACAGCATAAACAGCACGCGTCAGGCC 9565 32 100.0 34 ................................ AATCACGATCGTATAACGTGCCGTCATTGAGATT 9631 32 100.0 34 ................................ CTCTGGTGTGATGGTAATTTGATAACGACGATTG 9697 32 100.0 33 ................................ ATCTTTTTAGGCACCACTGGTGTCGGGAAAACA 9762 32 100.0 35 ................................ AACTGATGGTGGTGGAGATTGCGGTACTGGTGGCG 9829 32 100.0 34 ................................ AATTAATTGGTGCCACTACGCTAGACGAATATCA 9895 32 100.0 35 ................................ TAACAGCCTATTTGACGGCCACACCAACGTTAACT 9962 32 100.0 35 ................................ ATTTAAAAATTTTTGAAAATGTAATCGGATATGCG 10029 32 100.0 33 ................................ TCATCTTGCTTGTTGCTGTTCCAAAGAAAGCCA 10094 32 100.0 33 ................................ ATATAGAACTAGCAAACCTCCCATAACGATGAC 10159 32 100.0 35 ................................ AATGCTGTCAAGCTGATAGATTGGTGTACCATCGC 10226 32 100.0 34 ................................ TTTTCGTACCTGCTCTCGGTACTAGTACGATCTT 10292 32 100.0 35 ................................ TTGACTATGTTTCAGTGCACAAAAAAGATGTTACT 10359 32 100.0 35 ................................ TTTCCTAGGCCATCTGTATCGCCGCTTTTGGTTTC 10426 32 100.0 34 ................................ ATCAAACATGTTTTCGATGTATGCCTTGTACTCA 10492 32 100.0 33 ................................ TTAGCACTGATGAAAATGACTATATCACCGGCT 10557 32 100.0 34 ................................ TCCCAAACCCAGTTGATGCCGCCGATAGCGCCGT 10623 32 100.0 35 ................................ AACCTGGTGTTGACCACGTAAGACATCGTTCAGAG 10690 32 100.0 35 ................................ TGAAAGTGGGATAGCACCGCGATACGTAGCGACTG 10757 32 100.0 36 ................................ CTCCTGTTTAGCCCAAAACGAATAGACATGCTTGAC 10825 32 100.0 34 ................................ AAGCTCAACGAATGCCATCTTCAGTCACCTCACA 10891 32 100.0 33 ................................ TGAAAAACAGAAGTATCCAGTAAAGGAGAAGGC 10956 32 100.0 33 ................................ AGGTACTAGCAATTGCGGTTGTCATCGCACCGA 11021 32 100.0 36 ................................ AGACAAACTGTTAAACAACCAACGAAAAACGGCGAC 11089 32 100.0 36 ................................ AGACAAACTGTTAAACAACCAACGAAAAACGGCGAC 11157 32 100.0 34 ................................ CGCTAGACCCTGAAGACGCCAAGCGCTACATCAG 11223 32 100.0 37 ................................ CAGTAATTGTGGCATGGACTACGAAGAAAATTCTAGC 11292 32 100.0 37 ................................ AAAACTGAAAATACTGCAACATTGAACCGACTTGAGA 11361 32 100.0 36 ................................ ATCAACCGATTGGATCACAAAATTGTGTTTAACATG 11429 32 100.0 34 ................................ CGTTAACTCATTTAACGACGTAGCTTTAGCTACT 11495 32 100.0 34 ................................ AGTGCAAACACCAACATTCGTACAGCCCCTAGCA 11561 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 33 32 100.0 34 GTCGCACCTCACGTAGGTGCGTGAATTGAAAT # Left flank : GAAAAATTTAAACCTATCGATTCAAAAACTGTTCCGGTTTTAGTCCAGTGGCCTGAATGTCCTGAAAGTGGTCAACTAGTTGCAGAGGTTGAGGCTAGAAAGGACGACTTCGATCAGATTTCTGCACTAATGAAAAAGGCACAACAATTTGTAGTTCAAGTTTATATGGACGGTAGTCAGAAAACTTTGACTATGGGCAATGTCGTTGCCGACTATATTCCTGAGTTTGGATTGTGGATTGCTCGTGAGGGCTCATATAACGATGAGTTTGGTTTGGATCCAGATGGTGGCTCTAAGTTGGGCTTTGATATGTTATAGGGTAATATATAGTCGGGTGCGAATGTGTAGTTATCATCAAAACGTGGGAGACTCGCACCTTTATTTGGTAATTTAGTGTCCATTTATAATGGATTATGTTCTGATTTGCCTACAGGTATTAGTAAATGCCTTTATTAATTCTGCATGTAGTAGCGTTAGCCGCATTTTTACTATATTTTGCG # Right flank : TCATGACGCCTCCGATTCTGGATTGAAGTCAATATTTGAGACAGGTTTTAAGAGACATTCAGAACCGCGTTTACCTTCCACAGCTCAAATAAATCATTAATCGTGATTAATAACTTATTTGAACCATGGAAAGCATTAAATCAGGCGGCCATTTGGCTCGTAAGTGTTGCGATTTCAACTTGTAAGGGGGTCTGGTAGTCCAGTGAACTATGAATTCTCTTCCTATTGTAGAAAGCATGAACATATTCAAAAAGGACAGCAGCGGCAGTTTCATAATTCTCAAAGACCGGCACTGGATAAACACATTCCTTTTTGAGGGAAGCGTGAAAGGATTCCATTGGCGCATTATCATACGGACAACCCTTACAGCTGTATGAGTGGCGGATATGTAGTTCAGTTAAACGTTGATTGTAATCATCGCTGGTGTACTGTGATCCTAAGTCTGTGTGGATAATCAGGTCCCCAGTAATGGTTCGATTTTTAACCGCGCTTTCCAGGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGTAGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //