Array 1 253524-251784 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWO02000004.1 Salmonella enterica subsp. enterica serovar Amager strain HIY0118 NODE_4_length_418166_cov_40.533450, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 253523 29 100.0 32 ............................. TTAATCCGCGCATTCAATCACCTGAATACGTT 253462 29 100.0 32 ............................. GCGCCAATTTAAATGGACAGATTAGTGAAATT 253401 29 100.0 32 ............................. CATTAAATAAATCTAGCAATTCCTTTTGTCTC 253340 29 100.0 32 ............................. AGTCACTGCGGCGGGATAACCACGGGATGAGT 253279 29 100.0 33 ............................. CCTATTCGTATGTGCTTCCTGCTGATTTTCTGC 253217 29 100.0 32 ............................. TACGTTACTTCATGAGCATCCAGAAATGACAA 253156 29 100.0 32 ............................. CAGCTCGACGACACTGAACAGAGCGGAATCCC 253095 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 253034 29 100.0 32 ............................. AAACTGCTCGAAATTGTCGCCTATTGGGAAAT 252973 29 100.0 32 ............................. ATTATCTTTCACTTGCTTCAATAAGCCCCCGC 252912 29 100.0 32 ............................. CGGCGCACGTCGCTGGCCGATTCCCTCCACAC 252851 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 252790 29 100.0 32 ............................. TGTGCGCCGCGTAGGGAAAAAATACGGGTGCG 252729 29 100.0 32 ............................. CCGCCACGGTCTTTAATTCGGGGTATTCAGTG 252668 29 100.0 32 ............................. AGGTACTGTGCACGTAACGCGTCGAGGGCCGG 252607 29 100.0 32 ............................. CTACGGACTCGAAAGAATCGATGGATCTTGCT 252546 29 100.0 32 ............................. TTGCCGTCAGATACCGTACCTAAACCCCGCAG 252485 29 100.0 32 ............................. GACGCGATCGTCGAATATCGCAAACCAGCTCC 252424 29 100.0 32 ............................. GAATTAACAAAAGAGCAGTTAATAGAGGGGGC 252363 29 100.0 32 ............................. GAAAATCACCTTGATAGTTCTGGCCGCGAGAG 252302 29 100.0 32 ............................. CCTGGGGGCGTATGACGGTGTGACGGATGAGG 252241 29 100.0 33 ............................. CGCCGTTACGTTGCCCTGGGTGTTCTCGCCCGC 252179 29 100.0 32 ............................. GCAGGAAGACGCAGACGCGGCGCCCGGTGAAG 252118 29 100.0 32 ............................. GGGAAGGTCAGCCGTTCGCGCAGCACGTCGAT 252057 29 100.0 32 ............................. GTTATGGAGATCGGGAGAACAAACGCGCGGAA 251996 29 100.0 32 ............................. CCCGCCGCCGTCGCGTTTAAATACGACAACGC 251935 29 100.0 32 ............................. TGAGCACTGTTATTCGTTATAGCGGGTTTCGG 251874 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 251813 29 100.0 0 ............................. | A [251786] ========== ====== ====== ====== ============================= ================================= ================== 29 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 272152-269805 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWO02000004.1 Salmonella enterica subsp. enterica serovar Amager strain HIY0118 NODE_4_length_418166_cov_40.533450, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 272151 29 100.0 32 ............................. CCTGCAACGCGATTTCAAGTTCCTGAACGCTC 272090 29 100.0 32 ............................. ACGAAGCGCCTGGTTGAGATTGTACACGGCGA 272029 29 100.0 32 ............................. GATTCATAATCCGTATGCCTTTTTTAAATAAA 271968 29 100.0 32 ............................. GAGATCACACCCACAGTCTCCAACTTCATTAA 271907 29 100.0 32 ............................. AATTCCTCGATAGCGATCTGCGCCAGGTTGAA 271846 29 100.0 32 ............................. GAGCATTGCGTTGCCTCTTATGCGTCGTGGTG 271785 29 100.0 32 ............................. TACAGCAACGATATGATTCTTTGTTAAGTAAT 271724 29 100.0 32 ............................. TCTGAATTAATTAAAAAATTTGACGTCAACGG 271663 29 100.0 32 ............................. TGTACCGACCCGGCGTCTGGAACGGACAACCA 271602 29 100.0 32 ............................. TGCGGAATTATTACCTATATCACGATCGGTGC 271541 29 100.0 33 ............................. CGCGAGCTATTCCGGCCACACCGCGTGAAATGC 271479 29 100.0 32 ............................. GGTTTATGCCGTTGGACGAAATCGGCCAGGGG 271418 29 100.0 32 ............................. GGTGGACGGCCAGCCTGGTAACGATGGACTGG 271357 29 100.0 32 ............................. GGCGGCGATTTGCCCGCGTTTATCTTGCTGGT 271296 29 100.0 32 ............................. CCGGTCAGCACACCGGGTGTGCTGGTTTACGA 271235 29 100.0 32 ............................. CCTCCTGCTCAGGTGCCGAGAATTGAGGGCGC 271174 29 100.0 32 ............................. TTGATGACGTCGCCCTCGCCGTCTGCGACCTC 271113 29 100.0 32 ............................. GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA 271052 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 270991 29 100.0 32 ............................. ACATCTCGGCGTCTCGCGTGATGTGGCAGGCG 270930 29 100.0 32 ............................. AACCAGCAGAGTTAGACGTGTGGCAGTTCGGA 270869 29 100.0 32 ............................. CCTATTGAGGTTCATCCCCGCTAACGCAGGGA 270808 29 100.0 32 ............................. CAGTCGGGCGGCACAGGATCAATATGAGCGTG 270747 29 100.0 32 ............................. GTACCTGTCAGTTTAGCTTCAGCGATGAAAAG 270686 29 100.0 32 ............................. TTCAGGATGCCAACTGGCGAAGAGTTGCACGT 270625 29 100.0 32 ............................. TCACAGCAAACAATTTTGGACGTGTGTTGCGG 270564 29 100.0 32 ............................. CGGGCGCCAGTTCTTTTTGTTGCCTACCGGCT 270503 29 100.0 32 ............................. GCTGAGGGGATGGCGCTTAAAGACTGGCAGCA 270442 29 100.0 32 ............................. AATCACCGCCACTGGACGCGCTGCGTTTTGCG 270381 29 100.0 32 ............................. AATCACCGCCACTGGACGCGCTGCGTTTTGCG 270320 29 100.0 32 ............................. GCGACTCCAAAACAGCGCCCTACAAGTCAAAA 270259 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 270198 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 270137 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 270076 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 270015 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 269954 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 269893 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 269832 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCTGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAACTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTGTCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGAGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTACCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //