Array 1 28969-29631 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXHQ01000003.1 Riemerella anatipestifer strain CCUG25004 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 28969 47 100.0 30 ............................................... TTCTTAATTGTAATGCTTTAGAAAGTAGTT 29046 47 100.0 30 ............................................... TATCCCATCGCACATCTGTTTTATTTTGTC 29123 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 29200 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 29277 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 29354 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 29431 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 29508 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 29585 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 9 47 97.9 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : TATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 294348-293271 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXHQ01000002.1 Riemerella anatipestifer strain CCUG25004 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================= ================== 294347 36 72.2 81 ...................TGCTAT...T..A.G.A CTCCGCTGAAACTACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGGAAGGTAGAATTGAATGTTTTCATGATCT 294230 36 97.2 30 ...................G................ ATAGCAGTAGAACCATCAAACGCTGTGGCT 294164 36 97.2 30 ...................G................ CGGCAACAAAAGAAGGAGAAGAACAAAGCA 294098 36 97.2 30 ...................G................ AGCAACATATACGAAAATCCAGAAATCTTA 294032 36 97.2 30 ...................G................ TGTGCTTCCTACAACGAGTAGCGTTCCTTT 293966 36 97.2 30 ...................G................ TTAACTAAGTTACCTAGAAGTATAAATGAA 293900 36 100.0 30 .................................... TCTGCATCTACGAAGGTGATGAGGAAAAGG 293834 36 100.0 30 .................................... CAATAGGACCTATTATATTTACAACAACAG 293768 36 100.0 30 .................................... ATTTTGAAAATATAGAGGCGATAAGCCTTT 293702 36 100.0 30 .................................... TAAGAACTTTGTAGATGAAAGTGGTAATCT 293636 36 97.2 30 ...................C................ ATTCTAAAAGGTACAGAGAATGAAGCTAAA 293570 36 94.4 30 ...................C........A....... TCAACCAATTTAATCTGCAACTCTGAAATG 293504 36 97.2 30 ...................C................ TGATAGGAATATTTCTTATTCTATTTTTTA 293438 36 100.0 31 .................................... TCACAAACGGAAAAATATGTTTATTCCGTTG 293371 36 100.0 29 .................................... TTAGGAGCAAATAAGCTGTATTTATTGGT 293306 36 66.7 0 ...................TGCT.T...T.ATTGTT | ========== ====== ====== ====== ==================================== ================================================================================= ================== 16 36 94.6 33 GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Left flank : ACCTAGCAGATGACGGTAAACTAAACGGGTTGTGAGTACCCTTCAAATGTTACGCATTCACGAACTCCGCTGAAAACTTACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTTCTGTGTTTTGTGCTGTAGCCTTAATATGTTGTTAATACCCTTCAAATGCTACGCATTCACGAACTCCGCTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACACTCACAACAACTTAAAATACCAAAATAAAGTTGTGAATACCCTTCAAATGTTATGCATTCACGAACTCTGCTGAAAACGACAACAAAGTTGTGAGCTAAACTGAGAGCAGTCCCAACAATCAGACTTAGCAGATACTCGTGAAAAAAGTTGTGAGTACCCTTCAAATGTTACGCATTCACGAACTCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACTTGGACGAATAATACGCCATTGTTTAACTC # Right flank : ATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGATGTTTCAAAGAACGCTTTTCTTTACAACGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACTTATGATGCAGCACCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGCTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGCTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGTACATCTGCTTATGGGCATGGAGTATATCCTCGTACTTTTGGCGTTCAATGTTGCCCTTAAGCTCTT # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: R [matched GTTGTGAGTACCCTTCAAAATGTGATACTTCCCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //