Array 1 3099756-3098279 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043399.1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S substr. GXS275 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3099755 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3099694 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3099632 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3099571 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3099510 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3099449 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3099388 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3099327 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3099266 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3099205 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3099144 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3099083 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3099022 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3098960 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3098857 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3098796 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3098735 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3098674 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3098613 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3098552 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3098491 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3098430 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3098369 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3098308 29 96.6 0 A............................ | A [3098281] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3117503-3115888 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043399.1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S substr. GXS275 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3117502 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 3117441 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3117380 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3117319 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3117258 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3117197 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3117136 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3117075 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3117014 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3116953 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3116892 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3116831 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3116770 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3116709 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3116648 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3116587 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3116526 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 3116465 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3116403 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3116342 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3116281 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3116220 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3116159 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3116098 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3116037 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3115976 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3115915 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //