Array 1 14784-13784 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGGW01000007.1 Streptomyces carminius strain TRM SA0054 401, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14783 29 96.6 32 ............................T ACCCTCCGGGCCGTGATCCCGGGTCAGAGTGC 14722 29 96.6 32 ............................A GTCCCGGACGGCGTCGGCGTCGTTGCCGTACC 14661 29 100.0 32 ............................. CCAGCAGCGGGCCGGAAACGGAGCACCCCGCG 14600 29 100.0 32 ............................. AAGAAGACGGCCCCGAAGACGGCCCCGAAGCG 14539 29 100.0 32 ............................. ATCAGCTTCCCGGCCTTCGTGTGCACCCGAAA 14478 29 100.0 32 ............................. AGTTCCACGGCCTGGCGAAGCCCTTCATCACT 14417 29 100.0 32 ............................. GACGGGAAGGGTCGGCAGCTCGCGGACCGCGG 14356 29 100.0 32 ............................. GCCAAGTTGGGACTGACGGACGTCTCCGTCAG 14295 29 100.0 32 ............................. CGCGGGAATGGGCCCTCGCGGGCACCGTCGCT 14234 29 96.6 26 ............................C GGCGTACGACGGAGCACCCCGGCCGC 14179 29 100.0 32 ............................. TGCCGCGCCCTGCCCCGCCCCACCCCCTGACC 14118 29 100.0 32 ............................. CCATGTAGTGACCCGGGTGGGCCAGCTGACGC 14057 29 100.0 32 ............................. GGGAACTGGCCGTCACCGTCCGGCCCACCGCC 13996 29 100.0 32 ............................. GCGGCTGCGGTGAGGGCGATGATGACGAGCGC 13935 29 100.0 32 ............................. TCGTGACCGATTCCCCTGTTCCGGTCGTGGCC 13874 29 100.0 33 ............................. GCCGGAGAGCCCCCCCGCCGAGGAGGCCCCGGC 13812 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.4 32 GTTCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCCGCGCATCGTCGCCGACATCCAGCACCTCCTCGACCCGAACACCGAGTACGACGCCCCGGACCCCGAAGAACAGCTCGTGGACCTCTGGGACCCGGTGGCCGGAGCCATCCCCGGCGGCACCAACCACGGAACAGACACATGACCCACACTCCCCGAGGACACCACCCATGTCTTCGATGATCGTCATCTCCGCCACCGCGATCCCCGACCACCTCAGAGGAGCCCTGACCCGCTGGCTGCTGGAAGTCACACCGGAGCTGTACGTCGGCACCGTCTCCGCCCGCGTCCGCGATGAACTGTGGACCTCGGTCGCCACCTGCGCCGGGGACGGCATGGCAGTCCTGGCCCACCCGGCCGACAACGAGCAAGGCTTCGTCCTGCGCACCGTCGGCACCCGCCGCCGAGAACCGACCGACTTCGACGGCCTCACCCTGATCGCTTTCCGAAGAGAGAGTCAAGAAACGGCAAAGCCCTCGTAGAAGCGCAGGTCATAAAGT # Right flank : GGGCTCCATGGGGTCTTAGGCTTCCTACCGCAGGGGAGCCGTAAGGCAGCATGGGGGGGACGTGGCAGAGACCGTGCGGCTGTCGTCGTTGAATGAACGGCTGGTTGCCATCGGGTTTGAGCGGCTTGCTCAGGGCGTGCCGGCCGTGCTGAGCAGCTCCGTGTTCGCTGGCGAGCTGGCGTTCGGGGCGCCGGAGGGCTGGCAGAGCGTGTGCGAGTCGTCGTGGGAGCAACTGGCCGCACGAGCCGGGAAGCTTCTCGCCGATGGGCCGTTGTTCTTGGTGCCGACGTGGGAGCGAAGGGCGAACCCGGCCAGGCGCCGTGCCGCCGATCCCGACTCCTACTACGTCGAGGCCATGACCTCGTGCCGCCCACCTTCACCCGACGCCGTGATGGCGGTGCTGCTTCCGGCGCAGGCGTGGGCCTCGGACCGATCCTGGGCGGCCGAGATGCGCATGAAGGTGGCCGAGCACTGGGACACCCTGCTCGTCGTCTACGGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24527-27555 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGGW01000007.1 Streptomyces carminius strain TRM SA0054 401, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 24527 29 96.6 32 ..C.......................... AAGGCCCACGAGCAGGCCGCCGCCGAAGCCGA 24588 29 96.6 32 ..C.......................... TTCCGGCCGGCCGTCCTCCGCCGCGACCCCGT 24649 29 100.0 32 ............................. TACGGCGTGAGGCCCCGCCGTTGATCCGTGTT 24710 29 100.0 32 ............................. CACGGGTGGAAGCCGTGGGAGGGCCGCATCCT 24771 29 100.0 32 ............................. CGGATGCGGTCGGCGCGGTGCCGTACGTGGTC 24832 29 100.0 32 ............................. TCGTGGTCGTTCCGGCCGATGATGGCGACCGC 24893 29 100.0 32 ............................. CGGATGCGGTCGGCGCGGTGCCGTACGTGGTC 24954 29 100.0 32 ............................. GCGGCCAGGCCGGGGCGGAGCTTCTCGGACAT 25015 29 100.0 32 ............................. ACCCGGCTACCACCCCGGGTCCATATCGACTC 25076 29 100.0 32 ............................. TTCGGCGAGGACTGGCACGAGCGCCCGCCCAC 25137 29 86.2 32 ..C........A...............TA GCCCGTGCGAAGGCCCTTCTTGTCGGGTCGCT 25198 29 96.6 32 ..C.......................... CACGCGGACGACTTCGACGGCGACGGCTGGTA 25259 29 100.0 32 ............................. GGGTAGCCGGTGGTGCACGGGCCGATCAGCTC 25320 29 93.1 32 ........................TC... GAGAGGGGTGGCCGTGATGGATGAGTGGCTGC 25381 29 89.7 32 ..C.....................TC... CCCCGGGCACAGGCGAAGCCCCCACCGCGATG 25442 29 93.1 32 ..C....................A..... GCGCGGCACGGCTGGGGTCTGGCCGCATGAGC 25503 29 100.0 32 ............................. CACCCGGGCCGAGCGGCACCCGTCCTGGAGGG 25564 29 100.0 32 ............................. CGCCCCGGCTACTGCTACCTGTGCGCGAATGG 25625 29 93.1 32 .............A.........A..... TGGGGGAGGACGTGGGCGGCGGTCTCGGGCGG 25686 29 89.7 32 ..C.....................TC... CAGATCATCCTCGCCACGGTCCGGATGGGTCA 25747 29 82.8 32 ..CT...................ATC... TAGGCGGTGAACTCGATGCCGCCGTCCCTCAC 25808 29 93.1 44 .CC.......................... TGCGTCCGGGAGGTGCGCACCAGCCACCGCCGTGGCGGCCCGAG 25881 29 93.1 32 ..C..........A............... TACGTCATGCACTTCGGCCATGTCTAGGGTCC 25942 29 93.1 32 ..C......................A... GCAGTCCCTTCACGTGCGGCTTGCCGCAGGGA 26003 29 96.6 31 ............................C CCCGGCTTCGCGGCCACCCGGGAGCTGCTGC 26063 29 100.0 32 ............................. CCCGTGGCTGCTGAGGCGCCGGTGGTGGTGGT 26124 29 89.7 32 .C......................TC... CTGGCACGAGAAGGAGCACGGGACCCGGAGGC 26185 29 100.0 32 ............................. CAGACGATGGTCAGCGCGATGGACAAGCCAGC 26246 29 96.6 32 .......................A..... TGGGGGAGGACGTGGGCGGCGGTCTCGGGCGG 26307 29 96.6 32 ..C.......................... CCACCACCACCGCATCCCGGCGTGCCCAGCCG 26368 29 100.0 32 ............................. CCCTGACCGCCATCGAGGAGTCCGAGGCCCGC 26429 29 93.1 32 ........................TC... TACACGAAGGCGACGCCGGAGCAGTCTCCGAG 26490 29 100.0 32 ............................. GCGCCCAGGGCCGTTACGAGGGACTGTTCCGC 26551 29 96.6 32 ..C.......................... CACATGGTCGCCGAGGGAGTGCTGTACTCGGA 26612 29 93.1 32 ..CT......................... CTGTCCTCGCGAGCGGAGGCGTACTTCTTCGC 26673 29 100.0 32 ............................. TCGCCGGGGGCGTAGACGAACACGTGGATGAA 26734 29 93.1 32 ........................TC... GTGTGGTCGTCGGCCGCGTTGCGGCAGAGCCG 26795 29 89.7 32 ..C........A.............A... GCCCCTCGTACGGGCACGGTGCGATGGCTGGG 26856 29 100.0 32 ............................. CGCAGGGCGAGCATGGGGCGCTCTCCCCCGGC 26917 29 96.6 32 .................A........... AGATCGAGCAGCGCGGCGACTACCGCGCCGAA 26978 29 100.0 32 ............................. CTGGAGAGGCTGCGGAAGGTCAGCAAGGGCGT 27039 29 100.0 32 ............................. CTGGAGAGGCTGCGGAAGGTCAGCAAGGGCGT 27100 29 89.7 32 ...................G....TT... CCTGGGAGAACCGCCGCCCCGGCTACGCCTAC 27161 29 82.8 32 ...G..C............G....TT... ATGGTGGCGTAGATGCTCATGCTGCTCCGAGT 27222 29 82.8 32 ...G..C............G....TT... GTTCAGGTGACCGCCGTGACCGGCACGGCGCT 27283 29 82.8 32 ...G..C............G....TT... GTTCAGGTGACCGCCGTGACCGGCACGGCGCT 27344 29 82.8 32 ...G..C............G....TT... CCGGCCGGGTCGGTGGGGTAAGGGGCCGGGGG 27405 29 82.8 32 ...G..C............G....TT... GCGGCCCGGGATCGGGCCGTAGTCGACGGTGC 27466 29 82.8 32 ...G..C............G....TT... GAATGACCGTCGGCCCTGTCCGCCTGCTTGCC 27527 29 82.8 0 ...G..C............G....TT... | ========== ====== ====== ====== ============================= ============================================ ================== 50 29 94.2 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GGATCATCCCGCACGGCCGCGAACGCCTCCGGCACCTGAGCCTGAAACGGCGGTGTGATCTTCCCCAGGTCGTGCAGACCTGCCCAGAACGCCCCCACGGCCCGCGCCTCGTCCAAGCTCAGCCCCAGGGCTTGGGCGACCCGCTCCCGCATCCGCCCACCGAGCAGAACATCCCACAAGACCTCGAACACCGCGGCTGTGTCGAGCAGATGGCACACAACCGGATAGGGCCTCGGCAGACCCTTCTCCTTCCCCCACATACAAGAATCCAGCGGGAGGCCCATCCGAGGAAGATCCCTATGCGTCGTCACACAGACACACATAGCAACCGCCACTGACAACAGACCCCAACACCCGCACAGACCAGCAACACTGACAAGCCAGCGCCTACACTCCCCTGCCATGCCACAGCGACACGCAACAACCCCTCCCCGCCTCCCAGCACTCCAGGACGCCAGCAAAGAGACGGCAAAGGGGTTCTAGAAACCCAGGTCAGAAAG # Right flank : GACCTTCGCCATCCGCGGCGCCCGCACCAAGACGTGGTCCCTCGGTCCGGGACGTCACCGGCTGGCTCACCCGCCACCCCGACAGCCTGAGCGAGGACGAGTCGAACCAGCTGAAGGAACTACAGGCCCGCTGTCCCGCTCTCGCCCGCACCGCCGAGCACGTCCGCGCCTTCGCCGAACTGATGAACAACCGGCAAGGCCACCGGCTCCACAGATGGATCGCCGACGTCCGAACCGACGACCTACCCGCCCTCCACACCTTCGCAGGCGGCCTCGGCCATGACCTCAACGCCGTCGTCGCCGGGCTCACACTGCCCTACAGCTCAGGAGTCGTCGAAGGTCACAACAACAAGATCAAGATGCTCAAACGGCAGATGTATGGCCGTGCCAGCTTCGACCTCCTCCGCAAACGAGTCCTCCTCGAAGCGGCGGCCGGCCGTTCATGATCGTGGTTTCGGTGACCGTCCGTGGTGCCGGCACGGAAAGTGAGCCAGAACCAC # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [12-12] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 28066-28826 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGGW01000007.1 Streptomyces carminius strain TRM SA0054 401, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28066 29 79.3 32 TA..GACA..................... GCAGAGGTAGCCGTAGAGGTCGAGGAAAAGGA 28127 29 100.0 32 ............................. CCATGTCCCGTCCCGGTTGACGCGGATCACGG 28188 29 96.6 32 ..G.......................... CACTCGGCGCCGACGGCGGTGGCCAGCTCCCG 28249 29 86.2 32 ..G........A............TC... GCCGGCGTGGTGGAGAACGTGGTCGACGTCCG 28310 29 89.7 32 ...........A............C..T. GCGTGGCAGGACGGTTCCGATATCGGGTGGCG 28371 29 96.6 32 ..G.......................... TAGTCGCTGCGGTAGTGCGTGACGACCGTGTG 28432 29 89.7 32 ..G.....................TC... TAGATGGCGGCGAAGCGCACAGCGGAGTGCTC 28493 29 93.1 32 ........T..............A..... TCCCGGCAGTACGTCTCCGGGTAGACACTGGA 28554 29 93.1 32 .C...........A............... CAGGGGTACGGGGCCGACACGGTCACGCTGCT 28615 29 100.0 32 ............................. CAGAGCGGCCTCGGCGATCAGTTGTGGGTCGC 28676 29 96.6 32 A............................ CCCCCGGTGAGGCCGGGGGCTGGTGGGGTTCT 28737 29 93.1 32 ..G....................A..... AAACCGGCAGGCGGCGTTCCACCGGAAAGAGA 28798 29 86.2 0 ...G.......A............TC... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 92.3 32 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : TCCGCGGCGCCCGCACCAAGACGTGGTCCCTCGGTCCGGGACGTCACCGGCTGGCTCACCCGCCACCCCGACAGCCTGAGCGAGGACGAGTCGAACCAGCTGAAGGAACTACAGGCCCGCTGTCCCGCTCTCGCCCGCACCGCCGAGCACGTCCGCGCCTTCGCCGAACTGATGAACAACCGGCAAGGCCACCGGCTCCACAGATGGATCGCCGACGTCCGAACCGACGACCTACCCGCCCTCCACACCTTCGCAGGCGGCCTCGGCCATGACCTCAACGCCGTCGTCGCCGGGCTCACACTGCCCTACAGCTCAGGAGTCGTCGAAGGTCACAACAACAAGATCAAGATGCTCAAACGGCAGATGTATGGCCGTGCCAGCTTCGACCTCCTCCGCAAACGAGTCCTCCTCGAAGCGGCGGCCGGCCGTTCATGATCGTGGTTTCGGTGACCGTCCGTGGTGCCGGCACGGAAAGTGAGCCAGAACCACGATTCAGCCGT # Right flank : GGCCGTGCCCGGCCTCACGGTCCCCGGCAAGGTGTCCTCGCTGGGCGTGAAGCCCGTCCAGCCGCTGTCTCCGACCCCTGCGGCTACGCGTGCGAAGGGTCCAAGCAAGGCGCAGCAGGCGTTCCAGCGGGGCCTGGCGGCCCTCGCGCAGTGGGTGGAGCGGGAAGGTGCTCACCGGCCTGTTCCGCGCGGGCACGCTGAGGAGATGGCGGTCGACGGCGAGACGGAGCCGGTGATCGTCAAGCTCGGCGTACGGACATCGAACACCTGTGCGAGGCTGGACAAGCTCACCCAGGAGCAGCGGGACGTGCTGCGGGAACTGGGTATGGAGTGGGCGTGATGTCCCCCGGCCGACCGCTTCAGGAGGGAACCTCGGCCGGGGCTGCGGTCACCCGCGGCGGCCAGAGGGAGGGTCGCGGCGAAAGCGGTGGCGGGCCGGGCCAGAGCGGCGGGGTAGCCGGCGCCGTCCGGGCGAACGAGCTTGCCCGCGGCGGCAGCTC # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //