Array 1 652730-653953 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUX01000002.1 Alkalihalobacillus lehensis strain DSM 19099 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 652730 32 100.0 33 ................................ AACTACACCTTTATGCATTTCTTCTGCTGCGGT 652795 32 100.0 34 ................................ TGCACATTTTATTGAGGACGCAGCGGAACGTGTA 652861 32 100.0 33 ................................ ACCATATGTCTTATTTATGGATTCATAAATTCC 652926 32 100.0 36 ................................ ATAAGCTAGAACGTATAATTGGAACACATGAGTAAG 652994 32 100.0 36 ................................ ACTGTTATATGGGATGCTATATCCTGGGTAGGTCGT 653062 32 100.0 34 ................................ TAAAGAATCCTGCTGTTATTGCAAATAAAAACTG 653128 32 100.0 34 ................................ AATTGCGTTCAAGACTCGACCTTGTTCAAACGTT 653194 32 100.0 35 ................................ ATCATTCGGTTACCACGTTGTACAGCCGGAGCGTT 653261 32 100.0 35 ................................ AACGAAGAGGATTTTATAAAAGAACATGGGTTTGA 653328 32 100.0 34 ................................ TTGAAGGAAAAGGTCGTAAAGCAAGTGGTCAATT 653394 32 96.9 33 A............................... ATCTGGACCGCATGTTCCCTTTCGAATTTTATG 653459 32 96.9 35 A............................... TAAAATTGTTGGCTTCCAGCAATTTGGACCACCTC 653526 32 96.9 33 A............................... ATAAATGGTTTATACATTAATCACTTTACTACT 653591 32 96.9 36 A............................... TCGAAGCAAGCTCTTCGAAAAAAGAGAAAGAACAAT 653659 32 96.9 34 A............................... AAAGAGCGGGACTGGAAATGCGATAAACTATGCT 653725 32 96.9 34 A............................... TTCTATGTACTTTCTTTCTTCCTGAACCTGCCTG 653791 32 96.9 34 A............................... AACTCCTTTATTGGATTGTGTTCATCGTGAATAT 653857 32 96.9 34 A............................... TCTAATCATTCCATTGAAATGTCTTCTGCCGGGA 653923 31 87.5 0 A..........................-.T.G | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 98.0 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TTTAAACGGCGCATCGCACAGATGGCAAAGGAAGTAAAAGCGAACCCCCGTGCAGACGGAGTCGAGGAGATATTTTTACCAGGTGAACGCGAAGATAAGGAAAAGGCAAAGCGATTGAAAGAAGGCATCCCATTATCCGAAGCGGTAGTTAGTGAATTAGAAGAAGTTGCTGCCTATTATGGCGTGGCAATGGACCGTAATCTATTAAAAATGTGAGGGAAAGAGAAACAATAAAGAACCTCATAATTGTCCTGCTTCTTCGCTCATTAGCTTACGAGTTTGGCTGTTTGGGGAATGTCAAAAAAAATGAATGTGTAGTGAGTCGCCCTCTTCTTTTAATAGGTGCGAACCCGAAGCGAACATAAAATCCCTAGAAGACCCGCACCACTTTTTCGGATGAATGTGTGAGAATATGTAACGGATATGGAGCGTGGTTCTTTTTCTTATTCCATTTGTGTTACTATTTAATAGGAAAAGGTAGTTTAAAGCCTTTTTTCGCT # Right flank : GAGTGCACGAATTAGAATGATGACCATAGCATCCTAGAAAATCGGACTATGTATCCCTCTCGCTATGTCTGTACTTGTAAATGTCTAGACAAAAACCCCCACTTTTAAAGTAGGGGTTTTCAAGTTTACAATCCAAACACAATTGGCATCCAGAAGTACACGGCTCCGGTAATGACGATAATAGAGACGATGTTGAGCCATACACCAGCTTTCGCCATGTCACCGACAGCGAGATAGCCTGCGCTAAATACAGCTGTATTCGGAGGTGTGGCGACTGGGAGCATATAACAGGAACCAGCAGCTAGTGCAGCGGCAGCCATAAGAGGTAGAGGATCAACACCTAAGGCAATACCGAGTCCGACAGTAAGTGGTAGAATTAAATTTGAAACGGCTGTATTCGAGAGAATTTCAGTAATCCCGAGTACAAATAAGACTAAAAGCAATAGGACAAAAATGTATTCCATCCCTTGAAGCATTTGTAGTAAATCTCCAATCGATTC # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 672799-673367 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUX01000002.1 Alkalihalobacillus lehensis strain DSM 19099 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 672799 32 100.0 35 ................................ TTTCGTCTCAAGCGCTGACCAGACGTGTGTGCCTT 672866 32 100.0 34 ................................ TCCAATTATCCGCATTTTGTGCTCTTGGCTCGTC 672932 32 100.0 34 ................................ ATTACGCTTCAAAAGATAGTGCTGATAGTTCACA 672998 32 100.0 33 ................................ TTTACGACGGCTGAGGGAAGCGATCTTCTTCCC 673063 32 100.0 36 ................................ TAGAGCTAAGAGGAACGTTTGATGGTGCTGCTCCTT 673131 32 100.0 35 ................................ ATAATATCACAATTCAATTCAACTGGTAAGTTTTT 673198 32 100.0 37 ................................ AATTTTTGCTTTTTTCCCAACATTCGATTGTCTAAAT 673267 32 100.0 37 ................................ TTTTTGATAACGCATATTTAAGCAAGTACCTATAACA 673336 32 78.1 0 ........T..........T..A...AA.G.G | ========== ====== ====== ====== ================================ ===================================== ================== 9 32 97.6 35 ATCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TTAAGTACTTACAAACCCGCTGAAATAGTGTATTGGAAAAGCGAAGAAAAAAATAGAGATTTGTTAAATAATAAATTAAGTGACAAAGCTAATTCTGTTAGAAAACAACTACTCGAAATAACAAGCATAAATCTTGAATTGAAAGATTTGATCTCCTATCCAAAGATAAAAGGAACAAAAAATGACAATAGAATAAACGCCAAAGCCTCTCATCAATGGTTTACGAAAAATAGGAAATTGGTTGAAAAAAATAAAAAGAAAAACCTTCCTACAATATCGCAGGAACTAGATAATAAGCAGGAAAATAAACATTTAAAAAAGTTATAAAGCAAACATGCTAGGTGCGAACCCCAAGCAAACATAAAATCCCTAGGGGACTCGCACCACTTTTTTGAGGGAATGTGTAAAAATATGTGCTATATTTGCGAGGAAGTTGCTGTTCATCAGTTGATTTATAGTGATATGTAGTAGGAAAGTGCTTTTTTTAGCCAATTTTCGCT # Right flank : GCCGAAAGTTGCCAAATAGATTTAGAGGAAAAATAAGCGTATGTGCTCCGGTGAATGAAGTCGATTCGACTTTCTGACACTCGTAGCAATGGAGATGAGACCGATGGCGAATGACAAACTATTAAAAAGACAGACCGATAAGAAAGCAGAATCTAGTATTTTTTTCAATCTCTAATAATTTTTCGGTAACGTCCATAGAAAAAGTGATAGCGGAGATCAAAGGAAGTTGTAAGGAGTCGAACAGAATGAACAAAAGCAAGCTATTGCTGGTGGTTGTTCTTGCCATCATGTTAGGAGGATGTGGCCAAATGGGTAGCTCTTCAGGAGAAGAAACAGAAAAAACACCAGCGGAAATGGACCCGGCAGATTTGCCGCAAATTGATGCGTTTCAAAGCGAACATTCTCGTGAACTGATGGTGTCGACAGATCCAGTAGCGGAAGGGTTTTACTTAATGCGTTCAAAAATTGACGCCTTTACGATTTGGTTTCCAGAAGAGGCT # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 678122-678818 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUX01000002.1 Alkalihalobacillus lehensis strain DSM 19099 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 678122 32 100.0 33 ................................ TGAAAGCTATTGAAAATAACATCGGTGGCGCAG 678187 32 100.0 36 ................................ ACCTTGTCCCGTCGCGGTAAGCGGATAACGTGTGCC 678255 32 100.0 35 ................................ CCATAATTCCATCTAACATAATGACATTCATTATC 678322 32 100.0 35 ................................ TCCGCCGCCTGACGCCTCTTGTAGCGCTTTTAACA 678389 32 100.0 33 ................................ AAGAGCCAAATTATCAGCGCGCCCCCGCTGCGG 678454 32 100.0 35 ................................ AGTTTTAGGAAACATGCTCGGAGCAAACCCGTAGC 678521 32 100.0 34 ................................ ATGTCCAACGCTTCCTCTGCGTGTCTGTATAATT 678587 32 100.0 33 ................................ ATCCAAAATTAGAAACTTTAACCAAGTTATCTA 678652 32 100.0 35 ................................ CCAGCAAATTTAGCGCGATTAAAAATCGGGTCACT 678719 32 100.0 36 ................................ ATCATTCTCAGCATCTTCGAATCCTGTAATATTTAA 678787 32 75.0 0 ..........C..GA.....A..A...C.T.C | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 97.7 35 ATCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GTATGTAGAAGATGCACGTTTGTCTAACTTAATGAGATAAAGCAAATTATTATTATTATCTAGTGAATGTTATTGAATAAAAGTATTACTTCTTACCGTTCTAAAAAATGGTCGCTGTTCATCAATTGCGCGCCATATGACCTTTTTACAATTAGACAAACTCTATTAAATTTATGCAGGAAGATCATTTATCAGAGGTCAAACAATAGATTTTTATTGTATGAAAAAAGGAAATCGGTGAATTTATTAGAACAATTAATAAAGAACCAATTCCAAGTCACAAGTATAAAGAGACTATCTTCATTTAGGAGAACCTTTTTTGAAAGTAACTTCATAATTGGTGCGAACCCAAAGCGAACATAAAAACCCTGGGTGACCCGCACCGCTTTTTTGACTTAATATGTAACAATGTGTAATTGGTTTAGCTGAAAAATCTTACCTGAAGGCTAATTTGTGGTAATATTTAGGGGGAGAAAGGTGCTTTTAAGCGTTCTCCCGCT # Right flank : CTGCAGAAATTGAGGGAATATGTTTAAAAAGGGTGGAAGGTATGTCTACAACTGACATGAAAGCAAGTATCAATCAAGATACGTTAGTGAAATGTGTGAGTCTGCAGCTTAAGCGCCCTTTAATAAAAGGAGAGCTTGAATGGAACGTACAAGCTTTATCGGGAGAAGTGAATTTTACAACGCAAGGCATTTACCGTGTTTTTGGCTCGGCCCTTAAAAAGATAAAATGGTCGCTTATAATAAAAGTGATTCAAGAGGTAGAGGATAAACGGAACCCGCAGCACCATAATTATTGGAAACGAGAGGCTCTTATACATCAAACTGGTATTCTTAATCGTTATTCGAATGTCATAAAAAGCCCAACCTGTTATGAGGTCGAGGAAAAAAGTGATGGTACGATTTGGATTTGGATGGAAGAAGTGAATGGAGTTCATAAGCAGTTCTCGAAGGAAGACTTTGCTGTTATAGCGAAATCAATCGGATATTTTAACGGAACGTAC # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //