Array 1 799439-799800 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043559.1 Bacillus altitudinis strain CHB19 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 799439 32 100.0 35 ................................ AAGTTGTTGACCTCCGTCACCTCTGACATCAGTAA 799506 32 96.9 34 ...........T.................... CGCTGGTTGCTGCATACATAATAATCCGCACGCG 799572 32 100.0 33 ................................ ATCCAGTCGAAGCCTTTTAAAATTCAAAACAAC 799637 32 100.0 35 ................................ AACGCTGAGGATGCACCAGAAGGAAAGAAAGACGC 799704 32 96.9 33 ...................T............ ACAGTAGCCGTATTAATTACAGGTCTTATATTT 799769 32 81.2 0 ...........T....A..T.A...A.A.... | ========== ====== ====== ====== ================================ =================================== ================== 6 32 95.8 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAGGAAATAGCCGACCGGCTGGGCGAATCAAGACAAAACATCTCAAACATCCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCAAGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTACATCAAACTCATCGAAAAAATAGACCGGCTGATTTACCAAGAAGGACCTGGCTTTTGGGAGTTTATTGTGGAGTATATGACGAAGATGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTCATTCGACAAAATTGAGGAAAAATGTATATTTTATAAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TTCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGAGGCATTCGCACCTTTTTATTCGACAAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCAAATAGAAATTGAGGGTTTTGGCTATCATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGAATTGAAATTAACCCATTATCCGTAATCATCCTATAAACACCATGTCGCACTCTACATGAGTGCGTGGATTGAAATCGCTCTCCAATCGACCGTTTTTGCACCTGCATAGGTCGCACTCTACATGATTGCGT # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 808475-808837 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043559.1 Bacillus altitudinis strain CHB19 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 808475 32 100.0 33 ................................ TGATGGAGATCGTATTGCGAAAAAACTGTCTGA 808540 32 100.0 34 ................................ TATAAGATCAATTAGCATAAACAAAAAACTAACC 808606 32 100.0 34 ................................ GCGGCGATTTGCATACGATAATCAACTATCGCGT 808672 32 100.0 35 ................................ AAGCATCTGATCCCGCTCTACAGCATGTTTATCAA 808739 32 100.0 34 ................................ CTATCTGATCCAATTCTATTTTCACGTGTTTCAG 808805 32 90.6 0 ...................GA......A.... | T [808834] ========== ====== ====== ====== ================================ =================================== ================== 6 32 98.4 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TTTGACGATCATCCCATAAAAAATGTTATATTAGGGCGGAAATCGGAGTCGCATTCTACATGAGTGCGTGGATTGAAATCGTAAGCAGGCTTTAGCCTGCACGCAGTCGGCCGCGTCGCATTCTACATGAGTGCGTGGATTGAAATAAAAAAGATGTACCACGGATGCCATGAATATCGGGTCGCACTCTATATGAGTGTGTGGATTAATAATTACGAAAAACATAACTTTGCCTCACAGTAGTCATGTACTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATATATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATTATTACCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTTTACATGAGTGCGTGGATTGAAATTATAAGATCATGATTGATCTTATCAACATCAAGTCGCACTTTACATGAGTGCGTGGATTGAAATTACACTGCCGCGCACGCAGGAAAATGCCGCAGAGTGTCGCACTTTACATGAGTGCGTGGATTGAAATCTACTAAAACAACTCTATTCAGCATCTTGTTCACCGTCGCACTTT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 809129-809744 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043559.1 Bacillus altitudinis strain CHB19 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 809129 32 100.0 32 ................................ TATAAGATCATGATTGATCTTATCAACATCAA 809193 32 100.0 35 ................................ TACACTGCCGCGCACGCAGGAAAATGCCGCAGAGT 809260 32 100.0 35 ................................ CTACTAAAACAACTCTATTCAGCATCTTGTTCACC 809327 32 100.0 34 ................................ CTTTATGGCTCATTCATTGCTTTTTGCTCTTTAT 809393 32 100.0 34 ................................ ATTGTTGAAATTGAACGATAAAGGTTGGTCAATT 809459 32 100.0 35 ................................ AAAGGCTTTTGATTACTCACATTTCCTTCTGCTAA 809526 32 100.0 34 ................................ GGAAAAATAGCGTGTCCCGTCAGGATCAACAAAC 809592 32 93.8 34 ........C.C..................... TTCTCGGTTGTGTAGCTTGTGAGGGAGTTGATGT 809658 32 87.5 23 ........C.C..................C.A GGCTCGCAAGCACATTGTATTTT Deletion [809713] 809713 32 75.0 0 ........C.C.........A.A...CAC.G. | ========== ====== ====== ====== ================================ =================================== ================== 10 32 95.6 33 GTCGCACTTTACATGAGTGCGTGGATTGAAAT # Left flank : GATTGAAATGCGGCGATTTGCATACGATAATCAACTATCGCGTGTCGCACTCTACATGAGTGCGTGGATTGAAATAAGCATCTGATCCCGCTCTACAGCATGTTTATCAAGTCGCACTCTACATGAGTGCGTGGATTGAAATCTATCTGATCCAATTCTATTTTCACGTGTTTCAGGTCGCACTCTACATGAGTGGATGGATTAATAATTGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATATATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATTATTACCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTTCTGCGTTTTATACAAATTCAAGTACTATCCAGTTCAAAATCTACACATATGAATAATTCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCAACAAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGTACCTCATAATGATCCTTGTATTTATCTACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCCTGTTTGGCAATTTTCATAATCTCTGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGATGATCTCACCATTCATACTGCGTCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGGCGAAATAATAATGTCTTCAATCTCAT # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //