Array 1 163746-161842 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYHE01000001.1 Salmonella enterica strain BCW_5892 NODE_1_length_498693_cov_4.58661, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163745 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 163684 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163623 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 163562 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 163501 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 163440 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 163379 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163317 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 163256 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 163195 29 100.0 32 ............................. CCGCTGACGCACTGGATCAATCTGACGCAACG 163134 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163073 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 163012 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162951 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162890 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162829 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162768 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162707 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162646 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162585 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162523 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162420 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162359 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162298 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162237 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 162176 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 162115 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162054 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161993 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161932 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161871 29 96.6 0 A............................ | A [161844] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181370-179877 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYHE01000001.1 Salmonella enterica strain BCW_5892 NODE_1_length_498693_cov_4.58661, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181369 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 181308 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 181247 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 181186 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 181125 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 181064 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 181003 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180942 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180881 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180820 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180759 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180698 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180637 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180576 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 180515 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 180454 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 180392 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 180331 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 180270 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 180209 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 180148 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 180087 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 180026 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179965 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179904 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //