Array 1 2958-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCF01000026.1 Corynebacterium jeikeium strain Cj14566 198, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2957 29 100.0 32 ............................. GTGACGGTGCCCGAGCTGTAGGACGGCTGTAA 2896 29 96.6 32 ............................G TGGTTGTCTCCTACGCTGACCCAAACTATGGG 2835 29 100.0 32 ............................. CAGGATGGACAGACAATGACGACGCACAACTC 2774 29 100.0 32 ............................. CCCGTGGGCTGGAAGCTAGGTCCAACCCCAAA 2713 29 96.6 32 ............................T GTGGTGATGGCGTCGTGGATTGTGTAGGTGCG 2652 29 96.6 32 ............................T CTGCTCCCAGTGATCAATGATGAACTTCACGG 2591 29 96.6 32 ............................G GTACAAGAGATCCCGGGCAAGATTAAGTCTGC 2530 29 100.0 32 ............................. CCGTTCCGATCGGCGGGGATGTTCTTTGGTGC 2469 29 96.6 33 ............................A CCAACAAATCCTGCTGGTTACGGGCATTCTCAC 2407 29 96.6 32 ............................T GTCCTGGTCTTCCTCCGAGAAAAACCGAGACA 2346 29 96.6 32 ............................G CATCATCCAGGCCAGGCAGCAAATCATGCAGG 2285 29 100.0 32 ............................. AAGACCAACCTCACTGGTGGACAGTCCGCAAC 2224 29 100.0 32 ............................. GGCGATGACGAGCTGATGTTTGAGCAGCGTTT 2163 29 93.1 32 .....A......................T GGACCTTGCAGGATTACCTCACCAAGGCGCCC 2102 29 100.0 32 ............................. CCCTTGACAAAGCCAGCGATCAGCGACATTGC 2041 29 100.0 32 ............................. ATGGACAGTCACCACATCCTGATACCGGCGCA 1980 29 100.0 32 ............................. CGTTCATCCCGGCTGAGGATTGGAACAAGCAA 1919 29 100.0 32 ............................. CGCGACATGCGCCGACAGCTACACCACATCAA 1858 29 100.0 32 ............................. CGCCAGAGGTTGCCATGTCTACTGCGCCTACA 1797 29 100.0 32 ............................. ACCTGCTGCGGGTCAAGAATCGTTTTACCCAG 1736 29 100.0 32 ............................. ACCAATCGAATTCTGCGCAACATTACGCAGAG 1675 29 96.6 32 ............................T CTTGCCCACGCTCGGAGCAAGCGTGGCGAATG 1614 29 96.6 32 ............................G TCGCGTTCCGCTTGTTCCATGATTTTGTTCTC 1553 29 100.0 32 ............................. CTAGGCCGGGTGATCCTCTAATGCCACTAATC 1492 29 96.6 32 ............................T GCTGATGCCGCGGGCAAGTTTGGTGTGGAGTG 1431 29 96.6 32 ............................G CATGGGGCAAAAACCGCGCGTTCCGCAAACCG 1370 29 96.6 32 ............................G CTCGCTTCCGATAACGGCCTGGGTGGTGTGGC 1309 29 100.0 32 ............................. TCCTTAGCCTGCTTCGCAGCCTCACCAGAATC 1248 29 100.0 32 ............................. CACGAACCGCACTGTAAGGAGAACCTAACATG 1187 29 100.0 32 ............................. TACCGTCGGCTTCGGATCTGGCTTGGTTGCCG 1126 29 96.6 32 ............................G AGCGTTGTCACGACCGCATGGAACGCCATGGT 1065 29 96.6 32 ............................G GACGGTGTTCTGTACCTGGCGCACACCAGTCA 1004 29 96.6 32 ............................T GGTCACCGTCAGTGGGACTACCCGCTGGGCAA 943 29 96.6 32 ............................G GCAGGGTTAGCACTAGCATTCACAGCCAGAGC 882 29 96.6 32 ............................T CCGGGTTAATGTACCCGATCCGCTGCCCCTCA 821 29 96.6 32 ............................T GAGTCCGCTGGCCTGCTGGGCGCACTGGATAA 760 29 100.0 32 ............................. TAGATTGTTAGAGGTTTGCGAAAAGTCTGCCG 699 29 96.6 32 ............................G TAGATTGTTGACGCGGCGGTGCCGATGAGCAG 638 29 96.6 32 ............................G GCTGCGAAGCTGCCCGCGGAAATGGCCAACGC 577 29 100.0 32 ............................. CGGACACACTGCCCGGTGCCCGGTCTGCACCC 516 29 96.6 32 ............................G TAGGACAAAGCGCTAACCCATGCTCTGGGCAG 455 29 96.6 32 ............................T CTCTCGCCATTATGGAATCCCTGTCATATCAG 394 29 96.6 32 ............................T GAGAAGATCCGTGGCGATTATTTGCGTGCGGC 333 29 96.6 32 ............................T GAGTCCGCTGGCCTGCTGGGCGCACTGGACAA 272 29 93.1 32 .C..........................G ATTTCAGGTCAATTGCTGCAGACTCCCAGATG 211 29 96.6 32 .C........................... ACGACCGACTGGAAGAAAACCCTCGACGAGAT 150 29 96.6 32 ............................G TCCGGTCCAGCGCTGCAGCAGTTCGGCTTCGG 89 29 93.1 32 .C..........................G ATTTCAGGTCAATTGCTGCAGACTCCCAGATG 28 28 93.1 0 .C..........................- | ========== ====== ====== ====== ============================= ================================= ================== 49 29 97.6 32 GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Left flank : ATTGATTCCGAATTGTTGCTCTGGTCGGATTTAGAGGTTGTCGCTTCAGGACATAACTGGTCGAACGAAGGACCAGTGGAATGATGGTTCTGGTTGTTTCTGCGTGCCCTGCAGGACTTCGCGGTGATCTAACACGGTGGCTTTTGGAGGTTTCACCAGGAGTGTTCGTGGGGCGCCCCAGCGCCCGAGTGCGTGACCAGGTTTGGGAGCGCACATGCGATCTGGTGAATGACGGTCGGGCAATCATGGTGTTTCAAGCAGCGAACGAGCAAGGATTTGATTTCAAGACCCACCGGCATAACTGGGTTCCGACTGACTTCGACGGAGTGAACCTGATTACGCGACCAAATAACCGAGCACCATCATCACGACGGCGTGGGTGGAGCAAAGCACGGCGAAGATAGATGCGTGGGATGCAGTTCGCGGGTCCAGCGGCTGGTAGTAAAAACAAGTTGAACTAGAATCGGCTTTAAGGCTCAAAGAACCACAGCTCAGAGAGT # Right flank : C # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCF01000008.1 Corynebacterium jeikeium strain Cj14566 180, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 96.6 32 .C........................... ACGACCGACTGGAAGAAAACCCTCGACGAGAT 62 29 100.0 32 ............................. AACGCGTTCAAGCGTACGGCCTATGGCATGAT 123 29 100.0 32 ............................. TGAGCGCGCACCGCACCTTCATCTAGGAAATC 184 29 100.0 0 ............................. | AC,CTT,G [205,210,214] ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Left flank : | # Right flank : CGTTCTAGCGACAATCTGTTATGTCCATAGGGTTTTTGGACATGGAGTCCGGTGTCTTCTTGGACAAGGAGTCCATGGAGTTCTTGGACACTTCTAGCGGTTTATGGTTATGGCCTGCGTGTCGGCCGGGGTTTGGATAGTTTCGGGTTCATCCGCGGTGGTTGGCGATGTTTCATTCCTTCAACGAGGTTGATGTTGATCTGGCCACCTGGTGGCCTGTGGCTCAACGTGATTGGCAGCGGCACGCTGAAGAGGAATTCACCGTCATGGGCCGTGTAAAACTCCGCAACGTTATCGGCTGTGACCGTGGAGTAGAGCCTGCGGTTTTTAAACCTCAGCCCAATGTAGAGACCGAAGCCGCACACGCGTACAACGCCATCTTTGCTCACGCAGAGCTGGTCTGGGATGCCCCAATGGTTTGTTGAATTTGTCGTCGGCACCGTTAGTGTGGGGGTATCGGTGGAAGGTATGCCCTGCTGAGCTGCCATGTCATCGGTGCT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //