Array 1 14172-13350 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMN01000003.1 Cronobacter malonaticus strain cro138 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14171 29 100.0 32 ............................. ATATCGCCATTAATGGTGATGCCTCTATTAGC 14110 29 100.0 32 ............................. CGCGCTGTAACTGAACGTGCCGAGGTTAATTT 14049 29 100.0 32 ............................. CGCGCGCCAACTCCATGAGGGACATCCCGTTA 13988 29 100.0 32 ............................. ACGAGTCGTTCACAGGCGAGTTCATCAGCGTA 13927 29 100.0 32 ............................. TGTTTTCAGGTTTGTCATTCGTTGATCCTTTG 13866 29 96.6 32 ............A................ CCGCAGGTAACCAGCGGCGACTGGCAAAACTT 13805 29 96.6 32 ............A................ CGAGAGAATTTAAAACCCCCACCACCGACGCA 13744 29 100.0 32 ............................. TTCGTGTCGGTGCCGTTATCCGGGGTGAAAAC 13683 29 100.0 32 ............................. GCGTTGTCTTTTGAGTTGAGGACGCCGGGCAC 13622 29 100.0 32 ............................. AATTTTTGGGCGCTCGTGTGCCGCAGTAACCG 13561 29 100.0 32 ............................. GTGGTGACAGTTATTCCGAGTCCGTACCCGCC 13500 29 100.0 32 ............................. TGCGGCGGTCGAGAGGTTGGCGAACGCAGTGT 13439 29 89.7 32 .C.........AT................ AACACGTCGTCGTAGGCTTTTCCTGGCCACCA 13378 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGACCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATCCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATGAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTAGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAATGCTTAACGTTAGT # Right flank : CGGCAGCGTCAATACAGACTTCTTTTGAGAGCCTGTTCTTCGCGCCTGTCAATCACCTCTCCATTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGTGCGCTGTACGATGGCTTCAGTAAAGGGTTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGACTGGTGCTGGTGGACACCGGCTTTGGCTGTGACGATATGCGCCATCCGGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAACGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACCCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12997-13696 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMN01000007.1 Cronobacter malonaticus strain cro138 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12997 29 100.0 32 ............................. CAGGAACATATAGCCGGACGACCCTGCGAGGG 13058 29 96.6 32 ...........A................. CGCGCGCAATGGCTGCTTTTTAGCGTTTAGGA 13119 29 100.0 32 ............................. ACGTCGGGGTGCCAACGAAAGCCGGCGACTCA 13180 29 100.0 32 ............................. ACGTTTTTTTCGCTGAGCTCCTAGGTCATGAT 13241 29 100.0 32 ............................. AGCAGCCTCAGTCGCGCCAGCGGTGCGCCCGT 13302 29 96.6 32 ............................T CGACGCTGCAAACGCCGATCTATCAGCTATCG 13363 29 100.0 32 ............................. GGGCAGGACTCTTAATGCATTTTCTTTATCAC 13424 29 100.0 32 ............................. GCACGCCTGCTGCGTTACTGACGTACTCCTGA 13485 29 96.6 32 ............................A TAAGCAGGAGCCGCCAGCGGAGATGCAGGCGG 13546 29 100.0 32 ............................. TTGACCTGAGCGGTGAGCGTGGTAAACGTGCC 13607 29 100.0 32 ............................. AAAACGATACGAGCCAAAATCCTCGCCAGCAT 13668 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGAAACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGGCTAGTTTCGTTTTTACCGCTTCAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGCTGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : ATGGTTGAGTAGAATCGCCAGGCCTGGTGGGTGCGCTTTGCTTACCCACCCTACATATGTTGTTAGGCCCGGCGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGAGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGTTTAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //