Array 1 208840-210147 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNQ01000004.1 Salmonella enterica subsp. enterica serovar Tennessee str. 2691 contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 208840 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 208901 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 208962 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 209023 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 209084 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 209145 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 209206 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 209267 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 209328 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 209389 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 209450 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 209511 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 209572 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 209633 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 209694 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 209755 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 209816 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 209877 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 209938 29 100.0 31 ............................. GATGATCGTTTTTTCGTTACGTCGCGCAAAT 209998 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 210059 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 210120 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 226771-229302 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNQ01000004.1 Salmonella enterica subsp. enterica serovar Tennessee str. 2691 contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 226771 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 226832 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 226893 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 226954 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 227015 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 227076 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 227137 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 227198 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 227259 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 227320 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 227381 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 227442 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 227503 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 227564 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 227625 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 227686 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 227747 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 227808 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 227869 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 227930 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 227991 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 228052 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 228113 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 228174 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 228235 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 228296 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 228357 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 228418 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 228479 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 228540 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 228601 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 228662 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 228723 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 228784 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 228845 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 228906 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 228967 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 229028 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 229089 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 229150 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 229212 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 229273 29 96.6 0 ............T................ | A [229300] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //