Array 1 95904-94656 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOMJ01000120.1 Escherichia coli strain SC375 NODE_2_length_381091_cov_102.243_ID_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95903 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 95842 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 95781 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 95720 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 95659 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 95598 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 95537 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 95476 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95415 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95354 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95293 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAATCGTTATCCCC 95232 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 95171 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 95110 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 95049 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 94988 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 94928 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 94867 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 94806 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 94745 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94684 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113203-111405 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOMJ01000120.1 Escherichia coli strain SC375 NODE_2_length_381091_cov_102.243_ID_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113202 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 113141 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 113080 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 113019 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 112958 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 112897 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 112836 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 112775 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 112714 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 112653 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 112592 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 112531 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 112470 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 112409 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 112348 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 112287 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 112226 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 112165 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 112104 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 112043 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 111982 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 111921 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 111860 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 111799 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 111738 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 111677 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 111616 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 111555 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 111494 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 111433 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //