Array 1 55556-56054 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACZCK010000001.1 Enterococcus faecalis strain BIRD-101 NODE_1_length_915784_cov_151.213_ID_1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                      	Spacer_Sequence              	Insertion/Deletion
==========	======	======	======	=====================================	=============================	==================
     55556	    37	  97.3	    29	....................................A	TAACTACTCGATTCCCTTTGTTTTCCTCT	
     55622	    37	  97.3	    29	....................................C	CAACAATTCAGGAGGAAACCTTCTTCAGT	
     55688	    37	 100.0	    29	.....................................	CGTATATTTGTTCAAAATGTAAAGAACTT	
     55754	    37	  94.6	    29	....................G...............A	AAATTTACCAGATGATGTGAAACAATTTT	
     55820	    37	  97.3	    29	....................G................	CAAGCTTGAGCATTTCGTTCTTCTTGATT	
     55886	    37	  97.3	    29	....................................A	GAACTGGGAACCCTCCGAGCCGGTACCCT	
     55952	    37	 100.0	    29	.....................................	TCTTCTTCAGGCAATAAATCATCTTTTAA	
     56018	    37	  97.3	     0	....................................G	|                            	
==========	======	======	======	=====================================	=============================	==================
         8	    37	  97.6	    29	GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT	                             	       

# Left flank :   TGTATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTTGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAACCATGGAGAAAAAATAATTCTCCGAG
# Right flank :  GATGGCTATGACTTTGGTTATTATGCTGCTGTTTTATAGCCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAACGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAA

# Questionable array : NO	 Score: 5.61
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT
# Alternate repeat :   GTTTTAGAGTCATGTTGTTTGGAATGGTACCAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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