Array 1 47581-48419 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCQX01000066.1 Salinibacter ruber strain SP273 scaffold_65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 47581 30 100.0 37 .............................. GAGCGACCTCTCGGACGCCAGCAAACGCTCGTATCAT 47648 30 100.0 38 .............................. ACGTCCTTGTTGGCCTCCTCAACCCCGAAGCCGCGGCT 47716 30 100.0 39 .............................. GAGAGGAGGACGGATGGACGTGGCATGTGTACCCGATCC 47785 30 100.0 37 .............................. TGTAGCCGCTCACGGTGCCCCACACGTCCGCTACGAG 47852 30 100.0 36 .............................. GAAGGACGCGGCGGCGTGGGCGATCTACGGGCACGG 47918 30 100.0 39 .............................. CACGAGGTCGTTGATCGCCTTCCGGACGGTCGGCCGGGA 47987 30 100.0 36 .............................. TCGATGCTGCCTGTGTAGTCCTCCGACACGAGCCAC 48053 30 100.0 37 .............................. ACGGAAGGGCAAGGGTGAGGGCCGTACAGTCAATGTC 48120 30 100.0 37 .............................. CCGGGCAGCTTCCGTCCGGGGATGGGGCGCCGCGGGA 48187 30 100.0 36 .............................. ACGCAAACAGCGGCGCCATGCTACACCGGCAGTTAA 48253 30 96.7 39 ..........................G... ATCTCCTTCACCTGTCCCCCGTTTGCCAGGGCATTCAGG 48322 30 100.0 38 .............................. TCGTCAGCGCGTGGCCGACCGCGACCTTCTCCACGATA 48390 30 96.7 0 ..........................G... | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 99.5 38 CCTCTAATCGCACCTTTGAGGTATTGAAAG # Left flank : TTGAAGGGCATCCGGGAGGAACTCGTCGACATTCCATTCGAGGACCACGAGAGAAGCCAGGCCAAATACCTGGAGATGCAGCAGCATCTGCGAGAAATGGCGGACCGAATGATACAGGTCCGCATCTCTGAACACGATGATGATACCGCGGTGCATTCTATGGCCGCTGACGAATGCATGGGCATCCGCAAGCTGAGAGGAAGGTACTACAACGATTCACAGGGGTTACAGCTTGCCCAGACTGCAATCCTATGAGCCCAATGGAGACAACCTGATCTCGTCACCCTTTCCAAGCTCCCACTTTGAAGCATAAATTGGACAGGATGGTACTACTGATGATTTCGTCCAAACCATTGTTAGGCACGAAGATAGAGAGTCTCGTCACCCTCCCCAGGGTTGACACAGAACCGCGGGGTGACGATACTGGTGGTGCTGAGTGGAGCTGGGAATTAGCCCTCAGCGCCGCTGAAGATGGTATCGGAGACCCGAAGGGGTAGCCT # Right flank : GCCGAATAGCTTCGGGCCGCCTACGGCATCAACATCGTCTTGTAGTCGCACATCCACGGGAATGAAGGGCTGCCGCAGTTGAGGCAGCGGGCATTCCTGTCACGTCTCCTGTGCCGCATTCTCCGCTGCGGCCAGTCTTCCCGCAGTCAGTCTTCCTGTAGTTAGTCTTCCTGCAGTCAGTCTTCCTGCAGTCAGTCTCCTCTCGGCCAGTCTGCATGTGGCCAGTCTGCACGCGGCCACTCCTCGGGCCATGACCAACCGTTGGGGCACCGGGGAACCAGCGCTCCGATCCCTTCCCTCGCAGTCTGACGTTCCACCAGTACCTGCTTTTCCTCACTGGCCGGACGCCGGATGTCCGGCCTCCCCGCACGTCGTTTGTAGTATGGACCTGTGTAGAATGGACCTGTGAGAACCGGCTACAGAGAACGGCCGGACTCACCTACATTGGCATTTGCCTCGGCAGCTACCCTCTCGCAAGTACCCCCCGGGAGGCCGTTCCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCTAATCGCACCTTTGAGGTATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 52252-54735 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCQX01000066.1 Salinibacter ruber strain SP273 scaffold_65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 52252 30 100.0 36 .............................. CTCGACGTGAGGTGTGCGAGTCGGCTCTGTGTCCAA 52318 30 100.0 39 .............................. TCGATCTGGTCGCCCGAAAAATCGGTCGACGGGACCCGG 52387 30 100.0 34 .............................. CTTGCGCGTACCTGTCCTCCGTGACGTACTTGCG 52452 30 100.0 35 .............................. GTGCTCTGGGAGGAGCCTCGCACCCTCACGTACAA 52517 30 100.0 36 .............................. TCTGTGGCGACCGCGACAGAGTCCTCCCCGACAGGT 52583 30 100.0 35 .............................. TTCGGTGCTTTGCCCGTGGTCGCTGCGGTCTGCCC 52648 30 100.0 34 .............................. GGAGTATGCAACGACATTGACGACGACGTGATCG 52713 30 100.0 36 .............................. AAGCCATTGCCGACGCGATTGTCCAAACTCTAGCCG 52779 30 100.0 36 .............................. TTGCTCCGCGCCTGCCCAGCAGCGGCGTCGTGCGTC 52845 30 100.0 36 .............................. GTTGTCCTCTAGTGCTTGCTGCGCCCGCGTCAGGAC 52911 30 100.0 36 .............................. CCTGCATCGACGCAGAGCGCCGCGTCTGTCCATCCT 52977 30 100.0 36 .............................. CATCCCCAAGAGATACATCTGGACAAGCCACGAACG 53043 30 100.0 36 .............................. CCGTGCCAGCGGCGGGCTTTCTCTATGTGCGCCGGA 53109 30 100.0 34 .............................. GTCTCTCTAGGGCCGGCCACGACTAACCACACAT 53173 30 100.0 38 .............................. CCGATCCTGCCGATCTCTTTCTGCACGGAGAGAAGGGG 53241 30 100.0 37 .............................. ATTGCCACCTTAACGGTATCTCCCGCGCTCAAGTCAA 53308 30 100.0 38 .............................. GTGATCTCAGCGGGCACGCTGATGGAGGTGTCGCCAGA 53376 30 100.0 36 .............................. CTCATACTCTCTTCTCTGCTGCTCCTCCACGTGGTC 53442 30 100.0 37 .............................. AACGGGTAATCTGCCCCCCGAACGTGCCGCCCACGTC 53509 30 100.0 38 .............................. AAAGCCATGAGACTGAGCGTTTAGAGTGAGAATATACG 53577 30 100.0 36 .............................. TCTCCCCGGTTTGGTTGTCCGCAGTAATCACCGCTT 53643 30 100.0 37 .............................. AAACTCCGCCACCCGCCGAGGCCACCACCACCAAGAC 53710 30 100.0 35 .............................. ATACTCTTGGGGCGCGGGGCCGTCCGCAGGGTCTT 53775 30 100.0 35 .............................. CCCCTTCTTTGCCGCACAGATGGCCGCGCACAGCC 53840 30 100.0 34 .............................. TAAGATGGCCTCACTCGTTGACGCATCCGTTACG 53904 30 100.0 38 .............................. CCACCCCTTACGCGGGCGGCGTCGAAGAAGTACGCCAG 53972 30 100.0 39 .............................. GTGGTTCCAATTCGATGGGGCTCCCGTCCTGGCTCGCTC 54041 30 100.0 35 .............................. AGGACCCTCCAGGCGTCGAATCAAAGTCGAGAACG 54106 30 100.0 39 .............................. GAGGAACCTCGAACGGCTCCAACGGGCGGCGCTGAAGGT 54175 30 100.0 38 .............................. CAGAGAAGTGTGATGTGTCAGTCGGCACGTGGCAGTCG 54243 30 100.0 37 .............................. GGAGGTCCTCGCCGCTGCGCCAGACGATGGCGTAGCG 54310 30 100.0 35 .............................. TCGTCCCCGTCCCGCCGCCTTGCGGATACGCCTCG 54375 30 100.0 37 .............................. ACGAGCTGGTCAACACGGACGGCATCTCCGCAGGCAC 54442 30 100.0 35 .............................. CCGACCTTGACCTGGTCGCCCTTCGCCAGGAAGAC 54507 30 100.0 35 .............................. TGCTACCTCCTCCGTCACGAGGGCGGCGAAGTCTT 54572 30 100.0 35 .............................. AGGATCGGGACGTGTCCACTGCGCCAGTCGCAACG 54638 30 100.0 38 .............................. TTACCCCGAGGCTCTCCACAAACTCATCCGGCGGCTTC 54706 30 86.7 0 ..........................GGTC | ========== ====== ====== ====== ============================== ======================================= ================== 38 30 99.6 36 CTCCTAATCGCACCTTTGAGGTATTGAAAG # Left flank : GTGTAGCCGGGCAGTGCGATCGGGCGAGGATGCCGCTGGGCACAAGTGCTGTTGGGTGCGTCTACTGCTCGGAGATGCCGGTTCTGCTTGGAGATGCCGGTTCTGCTCGGAGATACCGGCCGTAGGCCCAGTGGCGGCCGTCAGGACCAGTACCGGAGGGCCCAACACCGGAGGGCCCAACACCGGTGAGCTCAGCACCAGTGAGCCAGACGCCAATTTGCAAGGCGTACGGGCCCGAAACCAGTCGGTGAGGTGAAGGGGGGCTTAGCCTCGGGCTTGGCCTCGTCACCCCCCTCTCGCGCGCTTCAGGACCTGAGGCGAACAGCTTGGTTTTTCCACCGATTGATCGCTAGTACCGTGATGGACAATGGTTTACACGATCTCGTCGCCCTCCGGGGGTTGACACAGAACCGACGGGTGACGATGTTTTCCGTGCTGAAAGACAGAGGAAGAGGGCGATCAGCGCAGCTGAGGGCAGGTTTTGCGGGGCCAGTCGCAGG # Right flank : GGTGTGTTGCACTGGCGTGGAGGGCTGGGTGGTTTACGTGCCTGATCTACCGGAAAGCGACATAAGCTCGTCTTCCAGGTCCATTCCGACATGTCGATGCCAACGCTCGGAGACGCAATTGCGCTAGCGGCGGAGGCCCATGCCGGCCAGACCGACAAGGCCGGCGCGCCTTATGTTTTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTAATCGCACCTTTGAGGTATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //