Array 1 1277610-1284188 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073779.1 Rubrobacter xylanophilus DSM 9941 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1277610 37 100.0 37 ..................................... GCTCGAGCTCCTTGAGCGCCTTGCTCAGCTCCTTCTC 1277684 37 100.0 38 ..................................... TGGAGCTGGACTTCTCCAACACTGCCGAGCTGGAGCGG 1277759 37 100.0 37 ..................................... ACCGCCTGAAGCACGCCATGCACTCGCCGCAGCCGAC 1277833 37 100.0 38 ..................................... CTACCAGGCCGGGGTCAATGTCATCCAGGGATTCATAA 1277908 37 100.0 35 ..................................... GATGAACGTCCGGACGGTGGCCCACCTGCTGAAGT 1277980 37 100.0 36 ..................................... GCCTGCTGAACCCCCACATAGAGGAGCTCAGGCGCG 1278053 37 100.0 37 ..................................... CCTCGCGTCGTCGCAACGGCGACGCGAGGCCGGAGCG 1278127 37 100.0 38 ..................................... CGGAGGCCGCCGCCTCCATGCGCTCTTCCTGCTTGGCC 1278202 37 100.0 37 ..................................... TCGACCTCATCAGCGGCTCCACCGGGCTCACCGGCGG 1278276 37 100.0 35 ..................................... CATGAGGCCGTCGGAGATAGCCGACGCGCTGGGAA 1278348 37 100.0 36 ..................................... AGTTCTTCCAGATCAGCAGCGCGGCGGTGCCGATCA 1278421 37 100.0 37 ..................................... ACGGTTTCGGGGTCTACCGCGGCCAGGCAAACGAGGT 1278495 37 100.0 37 ..................................... GAGACGGCGGCGGGGGAGTCCGGGAGGATCTCGGCCG 1278569 37 100.0 40 ..................................... TGGAGGACGTGAGGGCGGGCGTCAACCTCTCCGCGCCCTT 1278646 37 100.0 36 ..................................... TGCGGGTGCCGGCGCGAGAACGGCGAGACCGTCGAG 1278719 37 100.0 37 ..................................... CACGGCTGGCGCGGCGGCGCGGCGTCGCCGGTTCCGG 1278793 37 100.0 37 ..................................... CCAGAGAGGCGCGGTAGGTGGCCTCCAGGGAGTTCTG 1278867 37 100.0 37 ..................................... CTATCTGCCAGTACCTCCGCCGGGGCGCGGCATCAAA 1278941 37 100.0 36 ..................................... CGGGGGTCGGGTACGTCGTATCGTCCCTCGTTGCGG 1279014 37 100.0 36 ..................................... GAGCGGCCCCTCCTCCACGACCTGCGCCTCCACACC 1279087 37 100.0 37 ..................................... CCCGCTGCGCCTCGCTCTTGGTGTAGCCGAACTCGAC 1279161 37 100.0 35 ..................................... CGGCGGCTACTACCGCGAGCGCGGACGTGTCGCCG 1279233 37 100.0 37 ..................................... TCCCAGTCGATTCGCACGTCGCCGAGGATCCGCACCA 1279307 37 100.0 36 ..................................... GACGTGTGGAGGGAGTGGTGAGGTGCCCGTGGAGGT 1279380 37 100.0 36 ..................................... CCCTTCCCGACGTCGGGAAAACCTCTCGTACAGCCA 1279453 37 100.0 36 ..................................... TCTGGGAGAAGCTCGCTAACCGTTCGAAAAAATCCT 1279526 37 100.0 37 ..................................... CTCTCGACCCACGCGTACTCCACCTCCAGCCTCCGTA 1279600 37 100.0 35 ..................................... TCCGTTGTCCGCGATGAGCCGGATGTAGCCGTCCT 1279672 37 100.0 36 ..................................... TGCGGGGTCCGAGGTCTACGAGAGGGACCCCGACTA 1279745 37 100.0 37 ..................................... GGCGGTTCCCCCGCGTGGTGTTGCGCGATCTGCAGTG 1279819 37 100.0 35 ..................................... GCGGCCAGCGCCTCCACCACAGGTTGATTTTGCGC 1279891 37 100.0 36 ..................................... CGGCTCGCTCGTATGAGAGCCGGTACTCGGTGCGGG 1279964 37 100.0 36 ..................................... CCATTCTGGGCGGAGTGGCGGACAGAGTGGACGAAG 1280037 37 100.0 35 ..................................... TTCGATCGGAGCGTGTGATACGGTAGCCAGCCCGC 1280109 37 100.0 37 ..................................... TGGGCCACCTGGAGCGCCCCGACGCGCACATAGACTA 1280183 37 100.0 37 ..................................... TCCTCCTCTGGCTCGGCACCAACGCCGCGCTCCTGGC 1280257 37 100.0 36 ..................................... CGTACCTGACATCCGGCAGTATCAGCAGCTCGTGGC 1280330 37 100.0 36 ..................................... ATGTTGGCCGCTTGGTGTTGCCCGTTCAAATTGGCA 1280403 37 100.0 39 ..................................... AGGACTTCCCCGAGGGAGTCCCGCCCGGAGGAGCACCCA 1280479 37 100.0 35 ..................................... CCAGGAACAAGCCGCGCACCGCGCTGGTCGTCGTA 1280551 37 100.0 36 ..................................... GCCACCCTGGAGGTACCGCAAGCCGTGCTCGTTCAG 1280624 37 100.0 35 ..................................... CGCCCTGGCGCCGCAGCTCAGGGAGAAGGTCCGGA 1280696 37 100.0 36 ..................................... AGCCCCGGGACGAACTCGCGCACGTACTCGGTCCAG 1280769 37 100.0 37 ..................................... TGATGTTGCGCGAGGGCCGCTCCCCTACTTGGGGCGG 1280843 37 100.0 38 ..................................... TCAGCACCTTGGCGCTGACGCCGATTGCATCCGCGGGG 1280918 37 100.0 35 ..................................... ATGACCGCTATGACCACGAGCAGCTCGGCGAGCGT 1280990 37 100.0 36 ..................................... TGTTGGTCTGCTGCTGGCCGCCGATCGAGACGGTCA 1281063 37 100.0 37 ..................................... CGGCGGAGCCCCCGGTGGCTCTCCCGGTGGAAGGCCA 1281137 37 100.0 37 ..................................... CGAGGCAGCAGCAGGGGTGGACATCTCCGAGGTGGCG 1281211 37 100.0 36 ..................................... GAAGACCGCGCGCGCGTCGGCCGAGAGCTTGTTCGG 1281284 37 100.0 37 ..................................... TCTTTCTGAACCTCTCGCCGAGGATTTGCCCGACCTC 1281358 37 100.0 37 ..................................... TCCTCCTCTGGCTCGGCACCAACGCCGCGCTCCTGGC 1281432 37 100.0 36 ..................................... CCCGCACCGCCGCTCTTGCCCGGCTCTCTTCGGCGG 1281505 37 100.0 37 ..................................... CGCACGAGGATCCGCCGTGGGTTCCCGTGCGTCTAGA 1281579 37 100.0 36 ..................................... ACGTTCTGGATGTAGAGCATCACGCGCTCGCCCATC 1281652 37 100.0 37 ..................................... CTCATGCTCCCTAGTCACGGTCCCCCCAGACCGGAGA 1281726 37 100.0 36 ..................................... TCGAGGAGGCGATGCTGCTGCGCACTTTGAGAAGAA 1281799 37 100.0 38 ..................................... AGGGTGAAAGGGGTCTCGGCGCCGAGCAACGCCGCATC 1281874 37 100.0 37 ..................................... CGATCTCGTAGGCGCTGCCCATCACGAGCGGCACCGG 1281948 37 100.0 38 ..................................... ACCGCTCGAAAGCCCAGCACGTCATCCTCCCGCTCGCA 1282023 37 100.0 35 ..................................... CTAGTCGTGCGCATCCACCTCGCCGACGCCGCCAT 1282095 37 100.0 35 ..................................... GGCTATGTAGCGGTAGTAGTCGTTGCACTTATAAA 1282167 37 100.0 35 ..................................... GCCGAGACCGAACGCTCACGAGTGCTGGGGATCCG 1282239 37 100.0 37 ..................................... CCTCCCAGACGACCAGATACGCAAGGCCCCGCCCGGC 1282313 37 100.0 35 ..................................... CTCGTGCACCGGCACCGTCCCGGAGACGCCCTCGT 1282385 37 100.0 37 ..................................... CTTTTCTGAGGAGGACTTCTACGTCGAGGCCCACCGT 1282459 37 100.0 39 ..................................... TTCTATCGCGACGGCGGTTTCCTGAGCCGTCTGGAGCGC 1282535 37 100.0 36 ..................................... CTGGCATGTAGACCCGGATGGCCTGGCCCTGCTGGA 1282608 37 100.0 35 ..................................... CGAAGACGGCACCATCCAGCAGTTCATGCCCGGAA 1282680 37 100.0 36 ..................................... TTTTCTGCCAGGGCGGCCCGCTCGGAGCGGCGCCAG 1282753 37 100.0 37 ..................................... TTCTGGAGAGGCTCAAAGAACAGCTCGATACGGACGG 1282827 37 100.0 36 ..................................... GGTAGAGGATTGCGAACACGGAGAGCGGGAGCTCCT 1282900 37 100.0 37 ..................................... CGGGGATGCTCGCGGAAAGCTCGCGGAACTCGGGCCG 1282974 37 100.0 36 ..................................... CTACGCTGATCGCAGACTGGATCTCCGGCAGCGTCG 1283047 37 97.3 37 ................................A.... ACCGGAGCAGGGCTCGCCGGATGCGGGTTCATCTATG 1283121 37 100.0 37 ..................................... CCCCGGAGAGGCTTCTCACGTCGCAGAGAAGCAGGGC 1283195 37 100.0 35 ..................................... AGTTGGCTTGCGAGTGAGACAGCATTGCGAGGTGG 1283267 37 100.0 35 ..................................... CTTGAAGCCGACCTCATGAGCCACGCCGGAGGAAG 1283339 37 100.0 35 ..................................... CTCCCGGAGGCGGCGCCCGAGGGAGCCACCGGCGT 1283411 37 100.0 36 ..................................... CTTCATCGCCTGGCACGCCGGAGACTGGCCGACAAA 1283484 37 100.0 37 ..................................... TCAACCGGGAGATAGACCGCTCGAGCATCGTGCTCGC 1283558 37 100.0 40 ..................................... TCGCCTCGCCAGGCCTCGCCATGCCAAGCCAGGCCACGCC 1283635 37 100.0 36 ..................................... CGTAGACGGCATCCTCCGAGGGCTGGTTGGTGACGA 1283708 37 100.0 38 ..................................... TCGTCGCCGCGCTGCTCGCGGGTGCATCTGCGGTTGCC 1283783 37 100.0 39 ..................................... CGTCGGAGAGCCACTGCGCATAACGTGCCGGCTCTCCCA 1283859 37 100.0 37 ..................................... CCTCCATCGGGATATCCGTCGTCGGCACGAGGGGCTT 1283933 37 100.0 36 ..................................... CCTCTCGGCAGCCCTCTATGACGTAGCCCTCAAGGC 1284006 37 100.0 36 ..................................... TGAAGAAATTCGTCTTCCCGCTCCTGTCCCCTACGG 1284079 37 100.0 35 ..................................... TCCTTGTCGATGAGGATACCCCGGTTGTGCATCTC 1284151 37 100.0 0 ..................................... | G [1284185] ========== ====== ====== ====== ===================================== ======================================== ================== 90 37 100.0 37 GTTTCAGAAGCCACTCCGCAACATAGGAGACTGAAAG # Left flank : GGCAGATAAAGCCTCATACCCGCCAAGAGGCAACCTCAAAGGAGCCTCGGTCAGCACATACCGGCCGTCCCGGGGCTCAATCCCAAACCCCGCTTCGCGCAGAGCACTGATATAGCGGCGTATGGTGCGCGGGCTTCTGCTGAACCCCTCCTCCATCAAAAGCTCAGCGAGGCGATCGGCGCTCATGGGCCTCTCGGAGAGCCCCTTCAGTATCCTCAGCGTGTTGGCAACGGCATCCATGTGTCCCAACGCTACCCTTTCGCAAACTGCCGCGACTATCTGTTACAAGTCACCGGTGGGATCTCCGTCTTCTCACCATAGTAGCTGCAAACATGCAAGAAAGTAAGTTCGCAAGCCGCCCGGTCAGGTTCGCAGAAACCCCGTTTGCGATCCTCGACCTTGCAAAAGCACTCCCCCAAACGGACAATGTTGGTGCATGATCTTTGAAAACCCAATACCCGAGCGGAGAAAAGGGGCGATTACAAGCAGTTACAGGGCAG # Right flank : GTTACGTGTCCGCTTTCCTCGACCCCCTATAATGTCTCCGTAAGGGAACCGGGACGGCGAGGAGCGTGGCACCGATGGCTTTGAAAGGCGAGGTCCTGGAGAAGGTGCTGACACGGGTGCGTGAGCGCATCCCGCGGGAGGAGGCACCGCAGGTGGAGCGCTTCGTCCGCCAGTACTACGAGTGGGTTCCGGAGGAGGACGTCTCCGGCCGGTCGGTCGTGGACCTCTACGGGGCGGCGGTCTCACACTGGCAGCTGGGCCGGGGCCGGAGGCCGGGAGAGATTAAGATCCGGGTGTACAACCCCCAGCACGAGGAGCACGGCTGGCAGTCCACGCACACCGTGATCGAGATCGTCAACGACGACATGCCGTTCCTGGTGGACTCGGTGACGATGGAGCTGAACCGTCTCGGTCACGGGATACACCTGCTGGTCCACCCCATCGTGAGGGTTCGGCGCGACGGGGAGGGGAAGCTTCTGGATGTGCTCCCGACTGGAAGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGCCACTCCGCAACATAGGAGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 2248006-2245783 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073779.1 Rubrobacter xylanophilus DSM 9941 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================== ================== 2248005 30 100.0 39 .............................. GCCAGTTCTCCCAGCCGGCGGGTGGTTTGCTATGGGTAC 2247936 30 100.0 37 .............................. GGAGGATGTACTCCTCCCAGTCGCGACTGCCCAACTC 2247869 30 100.0 39 .............................. CTGTTTACCGGCGGAAAGGCGCAACGCCACGGCCCAAGA 2247800 30 100.0 36 .............................. GCATGTAGATGTATGCGTAGCGCATATAGACTACGT 2247734 30 100.0 36 .............................. ATTACATCATCGCCAGGCGGATGGTGCTGAGCCGCC 2247668 30 100.0 42 .............................. ACAAACTCCCCGAGGATGTACTTCTCCTCTGGGAGGAGTACC 2247596 30 100.0 38 .............................. GCCTCCTCTCCTCTTCTCTGTCGTCGAGGACGGTAAAG 2247528 30 100.0 36 .............................. TACTTGTCCGTATCGCCCTCCGGCCCGCCGTACGCG 2247462 30 100.0 36 .............................. TGATGTATTCGGGTACATGTGCAAACTCGATGGTGT 2247396 30 100.0 37 .............................. TCATGCCATGCGGGAACAGCGCCTGCGCACGGGCGTG 2247329 30 100.0 35 .............................. CAGCCTGAGCACCTTCTTGTTGCGCCTGCCCTCAA 2247264 30 100.0 36 .............................. GAAAGCGGGCAGAAAGGAGGGAGGCATGTTTGCCTT 2247198 30 100.0 38 .............................. GTAGCACGGGTACCGGGCGGTTCCTGGCGGGGGAAGGT 2247130 30 100.0 38 .............................. TCTGCGGGAGACTGTGGCTGAGCCTTCGGCTGAGCCGC 2247062 30 100.0 37 .............................. TTCCTTCCGAGTTTTCCGCGTATCTAAGCCAGATTCT 2246995 30 100.0 41 .............................. ACGGATGAGGGCAAGCAACTCGCGGAGTTGCTTAACACTCC 2246924 30 100.0 36 .............................. TTTTATAAGGCCGAACACCAACGGAGACCCCGGCCT 2246858 30 100.0 36 .............................. TGGACCATGGGTGCCAGGCATGGGACCAGCTCCCCA 2246792 30 100.0 39 .............................. TTCACTCTTCTGCATATTCTACTTCCCTTCGCTTCGCTA 2246723 30 100.0 36 .............................. GGGCTCGGGCTGGGTTGCCCTGCTTGCGCCCCGGCA 2246657 30 100.0 37 .............................. GATGACGGTCGAGAAGGGCCAGGAGCTGCACATGGTC 2246590 30 100.0 37 .............................. GTCTGCGTATGCGGGCTGTCCACGCGCACCGGAGATG 2246523 30 100.0 36 .............................. GTGTCCTTGGCCTTGGTGCCCTTGGCGGCGCTCAGG 2246457 30 100.0 78 .............................. GGTTCTCCCGGTTCTACCGGCTAGCGGCTAGTCGGGTTATGTTCGCCCCTCCCCACGGCGGAACGTGGGTACCTGCGG 2246349 30 100.0 37 .............................. TGGTCCACGGATGACAAGCAGCATGGGCGCGTCCTCG 2246282 30 100.0 37 .............................. GCACCCAGGCCTCCTCCATGGTCCTCATCACCGACAG 2246215 30 100.0 40 .............................. CATATCTAAGCCAGATTCTCCGCTTGCATGGTGTATGCAT 2246145 30 100.0 35 .............................. AGCCTTCTTGGGCGCGCCCACAATCTCCGCAAGCT 2246080 30 100.0 37 .............................. TCGCGCAACCGCGTGTGGCGGCAAAGCGGAGTACAGG 2246013 30 100.0 36 .............................. TGAAGCGCGCCAGTGCCTCACACTAGAAAAGCACTC 2245947 30 100.0 38 .............................. TCTCCAGTTTACGCGGGGCGCGAGGAATTCCTCCGCCC 2245879 30 100.0 36 .............................. TAGCGGTCTCTGGCTACCTCCAAGCACATCTCCCAG 2245813 30 76.7 0 ....C......G.A......AA......GA | A [2245788] ========== ====== ====== ====== ============================== ============================================================================== ================== 33 30 99.3 39 GTTTTGAGCCTACCTATGAGGGATTGAAAC # Left flank : CTCTACAAACTCGAGAAACACCTGATGGGTGACGAGCCTTACGAGCCGTTCGTAAGCCGGTGGTAGGAGCGCGTGTACGTGATCATGGTCTACGACGTCAACGTAAAGCGCGTGGTCAAAGTGCTCAAGATTGGCCGCAAGTACCTCGAGCACGTCCAGAACTCCGTCCTCGAAGGTGAACTCAGCCCCGCACAGTACAAGAAGCTCAAGCACGAGGTGAGCAAGGCCATAGACCCCGAGGAAGACGTCGTGCGCTTCTACCTGCTCCGCAGCACGAGATACCTCTCCACCGAAGAGCTCGGACTCCCCTCCCGCCTAGAGCAGGAGACCAACTTCCTGTAGTCGCGTCGACCTCCGATAGCGCATCACCCTCCGGAGATCGACGCACGAAGATCTGGCTTACCCAAGCGCTTTGCTCTATAATCAAGTTTAAGAGCAAGAAAGTCACGGGAGAAAGGAGGAATCCGCAAAATAGCTGCAAAACCGGCATTTGGGCGTGG # Right flank : TTGCAAGCCTACAGAGCCGCGAAGGGAAGTACGCATTGCCAGGGCTGCTCGCCGTTGCGCTGGGGCTGGCGCTCATCGACAGCGCCAACCCCTCAGCCATCGCCATCACCATCTACCTGCTGCTTTTCACCGACCGCCCCGCCTCGCGGGTGCTCGCCTACGCGGGTGGCATCGTCACCGCCTACCTCACCGCCGGGGTGGCGATCGTCACCGGCCTCGAACTGCTGACCGAACGGTTCGGACAGCAGCTTGAGAGCCCAGCCGCCTACTGGGTCCAGGCGGCCATCGGGGCCGCGCTGGTGGGATACAGCTACATGCCGCAGGCCAAGCGGCCGTTGCGGGAGCGGACGCCCTCCTTCCGCGGACATCTGCCGCTATTCGGCCTGGGACTGACCATTTCCGCTGTGGAGTTCAGCACCGCCTTCCCCTACCTCGGTCTGCTCAGCGTGATCAGCACCGCTGCCCTGCCGGCTTCTCAGTGGCTCCCGATCCTGGCCGCC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //