Array 1 3785581-3784760 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025581.1 Nocardioides houyundeii strain 78 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3785580 28 96.6 32 .....................-....... ATAGAGCACCAGGTCACCCACGGGCAGAACCT 3785520 29 100.0 32 ............................. GTTCGGCGGGAATCGGGACGAGTTCTTTCAAA 3785459 29 100.0 32 ............................. GTTGCGGACCAGGCGAAGTTGTCGATTGAGGC 3785398 29 100.0 32 ............................. GCTCAGGGCGGTGTTCTCAGCCCACGCCTGCG 3785337 29 100.0 32 ............................. TTCATCAATAACGTCTGGGAGCGCGGCACGTC 3785276 29 100.0 32 ............................. ATGGACCTGACTCCCGACGACGACTTCCTGTC 3785215 29 100.0 32 ............................. CTGGAGAAGGCGTTCGCCTGGACGAAGGTCTC 3785154 29 100.0 32 ............................. TCCCTCAAGGATCTGACGAACGAGCAGCGCCA 3785093 29 100.0 32 ............................. TTCCACGACGGCAAGGCATGGCTCGCCCATCG 3785032 29 96.6 32 ...A......................... GACTTCGTGCACCCCGGCAACTGGTACGGGGT 3784971 29 100.0 32 ............................. GAGCCCATGCAGGCGTGGCAGATCGGCCAGCT 3784910 29 100.0 32 ............................. TCAGCCTGGATGGACAGGCACAGCACCCCGCC 3784849 29 100.0 32 ............................. GTGCCCAGGTCGACCACCGGTCGTGGTGACCT 3784788 29 96.6 0 ..G.......................... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GTCCTCCCCGCTCACGCGGGGGTGCTTCC # Left flank : CCGGGTCCTGTTCGCCACCGCCACCGAGTGGATCACCCGACTCACCGACGCCCACCGCGCCGGCCGGCTACCCCAAGAGCTCACCCGGCTACGCCGCTACGGGCTGATCATCGTCGACGAGGTCGGCTACCTGCCCTTCGAACAAGACGCCGCGAACCTGTTCTTCCAGCTCGTGTCCAGTCGCTACGAGCACGCCTCGCTGATCCTCACATCCAACCTGCCCTTCAGCGGCTGGGGCGGCGTCTTCGGCGACCAAGCCGTCGCCGCCGCGATGATCGACCGCGTCGTGCACCACGCCGACGTCCTGACCCTGAAGGGCGCCAGCTACCGACTACGCAACCGCGGCATCGACACCCTGCCCAGCATCAGAACCCAAGACACGGCAGACTAGAACCCACAACCGGTGGCCTCGTTTTCCACCGTCGGATCGGCCCCAGATCCGAGCGTTGCCGACACGGGGGTGCTTCCGTGGACCCTGGCTCGCGTGGCTGTGTCGGCTC # Right flank : GTGTTGGCCGGCCAGGCGGCTCCGCGCCTCCGCCACGCCGATGCGGTGGCTCACCAGGTCATTGAGCGCCTGCAGTCGTCGCGGGTCGGCGGTCATGGCTGCATCTTGTCCTCTGCCTCGTGCCCCAGGGGCGTCCATTTCGTCATGGCGCCGGCTCACGCTCGGCGGCGACCAAGCTCACTATGCGTGGGACGCTGGGCGACATGGAAGAGCGGGATATGCAGATCGTCCTCGTCGATGAACGGGACAGTCACTGGGAATCGACGACACCTCGGTTCCGTGTATATCTGCAGACGAAAGGAGGCCCCCGTCTTTCACATTCCACGGCCACGTACGACGTGATCGGTGGAGATGTGATGAAGGTGATCGACTGGGCCGCTGCGGAGGCGGGTTCTGACCTGGCGTACGGGGTTGCGCTCGTGCACGACGACGCCTTGGCCGAGCAGACGAACCCCGGCTGTGGGCGCGGATTGATCTGGTTGGTCGGGCGGGACCTGAAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCTCACGCGGGGGTGCTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.10,-12.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3790189-3787779 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025581.1 Nocardioides houyundeii strain 78 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 3790188 29 100.0 32 ............................. GTCGAGCGGGCCTCTGCCGACGCCGGTGGCGC 3790127 29 100.0 32 ............................. CAGTTGGGCGCAGTGGGGTCGGTGATGGTGCG 3790066 29 100.0 32 ............................. TTCCACAGCCCTGCCTCGCCCCACGTCGGGCC 3790005 29 100.0 32 ............................. GGGCCGGGTGATGGCGATGGAGCGGGCGAGGA 3789944 29 100.0 32 ............................. GTCGGCCAGGTCGGTGAGGTAGCGGTTCGTCA 3789883 29 100.0 32 ............................. TTCACGCGGTTGCAGATGCGGTGTGCGGCTTG 3789822 29 100.0 32 ............................. CGGGGCGTGCTGGGCTGGAGGATGCTACGGCT 3789761 29 100.0 32 ............................. TGCTCAGTCCACGTCGGCGCCGGAGAGATCAC 3789700 29 96.6 36 ............................T CGACTCGTGCGACTCTGCGACGGGATGGGCCGCATT 3789635 29 100.0 32 ............................. GACCGCGGCATCATGCGCTGGGAGCCCGACAC 3789574 29 100.0 32 ............................. GGGAATCCACGGGGCGATGGCGAACCCGTCGA 3789513 29 100.0 32 ............................. GGCGCATTCACCCGCTGACACACACTGAAAGG 3789452 29 100.0 32 ............................. CATCGGGGAAGTGGTGCGGGCCGTCCATGTTC 3789391 29 100.0 32 ............................. GTCTTCGAGCGCGGGACGTCTGGCAAGTGCGG 3789330 29 100.0 32 ............................. GAAGCCATACGCGCCGCCGACCTCGTTCTGGT 3789269 29 100.0 32 ............................. GCCGGAGGAGCCCACGGAGTTGTTGTATACGG 3789208 29 100.0 32 ............................. GCGGAGGTGAGCGCCCAGCCGATGAGGACGCC 3789147 29 100.0 32 ............................. GATCGCAGCGCGCAAGACGCGCGGCGGCTGGG 3789086 29 100.0 32 ............................. GCGGCGGGGCGTGAGTGCGGGAACGCGGAGGG 3789025 29 100.0 32 ............................. GTCGAGCCAGTCGACGGCCAGCACGTTGATCT 3788964 29 100.0 32 ............................. GCTTTCCAGGCCGCGGCGGCGCCGGCGACCGC 3788903 28 96.6 32 .....................-....... GCCCCGAGGTAACCCACGGTCTCGGTGTACGC 3788843 29 100.0 31 ............................. GAGATGGCTCCCGGGCTCCATGTCGTATTGA 3788783 29 100.0 32 ............................. TGAGGGCCGAGGAAGCGCTTGGTGGTCGTGGG 3788722 29 100.0 32 ............................. ATGTTCGCCGCGATGCCGCCGATCACCTACGT 3788661 29 100.0 32 ............................. GTGACTGCCAGCCCGGGCGGGGACTACCGCTC 3788600 29 100.0 32 ............................. GGTGAATGCGGAAGGATCAGGCGTCTGCACAG 3788539 29 100.0 32 ............................. CGGAGCGAGGCGCGTCGATGGAGCGGATCATC 3788478 29 100.0 32 ............................. GAAGGCGGGTAAGAAGAAGTGAGCAAGCTGAT 3788417 29 100.0 32 ............................. GCCGAGAACAGGTTCCCGCTGGTGGCGCCCCG 3788356 29 96.6 32 ............................T GAAGCCGCGAGAGACCACCGGCACGCGCGACC 3788295 29 100.0 32 ............................. CGGCTGCTGTCGGAGGGCAAGCCGATCAAGGC 3788234 29 100.0 32 ............................. TTCTCGCCGACCCGGATGTCAGGCGCGAGCTT 3788173 29 100.0 32 ............................. TGGTCTTCGTTCATGGTGGGGCTCCTGTCGAG 3788112 29 100.0 32 ............................. GATGGAGGCCGGGGGGAGCGGGTCGTTGCGCA 3788051 29 100.0 32 ............................. GCCCGCACCTACATCACCGTGCAGGTGGACGG 3787990 29 100.0 32 ............................. AAGCCCCGCACAACCTTGACCCGCACGACTCG 3787929 29 100.0 32 ............................. CATCCCCCAGTGGAAGTCGTCGGATCCGTAGA 3787868 29 100.0 32 ............................. TCGCCTACCTCTACGGCCCCGAGCAGCAGAAG 3787807 29 86.2 0 ........................TCGA. | ========== ====== ====== ====== ============================= ==================================== ================== 40 29 99.4 32 GTCCTCCCCGCTCACGCGGGGGTGCTTCC # Left flank : CTGGGCGTTGAGACCGAGGAAGACGACTGGTCCGTGGATGCGCTCAGCCTGTGGGCGGCAGACGGGAAGCTGGTTCGAGCGAACACCAACTACGGGCGTGGCCTGGACGCAAGCGACCTGATGCCGTGAGCTACGCAACGCTGATCTCTTCATCCTTGCCGGAGGGCATGCGGGGCGCGCTGAACAAGTGGTTCATCGAGGTCCTGCCCGGGGTGTACGTCGGCACCGTCAGCAAGAGGATCCGTGACGAAGTCTGGTCCGCTATCAGCGACTGGGTGCGGGACAGGGCAGACCCGGCCGTCTACGCAGCGATGATCGAATCAGCCGCCACCGAGCAAGGGTTCGAGATCAGAACCGTCGGAACCCACGCCTACGAGGTAGTACACCTTCACGGCCTCCAGCTAGTGTCCCGGCAGCACAAGGAGGCGTCAGCAGGCTTTCTACAGGACCTTCCCGACCCGACCTGGTGATGCCGAGACCATCATCGCAGGTCAGCAAGG # Right flank : GACGCTCGAAAATGAGGCCATAGCGACGGGCGAAAACGAGGCCACCCCGACAGATTGGGTGGGTGATCTCAGTGGAGGATTGGGCTCTGATTCGGCGGCTGGTCGCGGACGGGGTTCCGCAGCGGCAGGTCGCGCGGGATTTGGGGGTCGGACGGTCGACGGTGGCGCGGGCGGTGGCCTCGGATCGGCCACCGAAGTACGAGCGGCCGGCGGTCCCGACGTCGTTCGATCCCTACGAGGCTCGGGTGCGTCAGCTGTTGAAGGACACCCCGGACATGCCGGCCACCGTGCTGGCCGAACGGGTGGGATGGACCGGGTCGATCACCTGGTTCCGTGACCACGTTCGGCGGCTTCGTCCCGAGCATCGGCCGGTCGACCCTGCGGACCGGTTGGTCTGGGCGGCCGGGGATGCGGCGCAGTGCGACTTGTGGTTCCCGCCGAGGAAGATCCCGCTCGAGGACGGCACGAAGGTGTTGTTGCCGGTGCTGGTGATCACCGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCTCACGCGGGGGTGCTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.10,-12.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //