Array 1 337049-339273 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAS01000012.1 Clostridium tetani strain 89.12 contig_0012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 337049 30 100.0 36 .............................. GCTATAAGAATAATTCTAATTTTATCCAAGGAACTG 337115 30 100.0 38 .............................. TTCCAATTTTACTAGCTGCTACCCCAACGCCTAATAAT 337183 30 100.0 37 .............................. TAAATATATTACTTCCTTCTTGCACTGTAGGTTTTTC 337250 30 100.0 35 .............................. TTGTTCGTAACTGTTAAAGCTATCTTTCTTTATGC 337315 30 100.0 37 .............................. AGAGCCTAGTTTCCTAAGCCCTTATAACCAACTTACC 337382 30 100.0 39 .............................. ATACAATGCTCCATGGAAAGGACTCCACTTAGATATATA 337451 30 100.0 36 .............................. CCCACATCATTAAAGGATATAAAATTACCACCTTCC 337517 30 100.0 37 .............................. GTTTTAATATTAATATCGGCAAGTGCTAATTCATATG 337584 30 100.0 36 .............................. AACTGCACAGTATCACCGCTAGCTTTTAATTCTTTA 337650 30 100.0 36 .............................. TTTTGAAGTATATTATAAAGGCACAGTAACACGCCC 337716 30 100.0 35 .............................. GCTTTAACTCTTAAAAAAGATAAAGTTCTAAATTC 337781 30 100.0 36 .............................. AAGATGCAGCCAACGCACTTGGATATATGGCTTTGG 337847 30 100.0 36 .............................. GGTAATGTAAGTAATTCTACAACCAATAATAGCAAT 337913 30 100.0 36 .............................. ATACAGAATACAAGATTATAGTTAGTGGATATAGAA 337979 30 100.0 38 .............................. AAATTTAGATAGACAAATAGAAGAATTACAAAAGTACC 338047 30 100.0 36 .............................. AATTTAATTATTGTAAACTCAATGTAATTGCATTGA 338113 30 100.0 37 .............................. CTTGATTGTAAAGAATTTAATAAAAAAGAAATTGTAA 338180 30 100.0 35 .............................. AATGAAGTCAAATAATAACATACCATTTTGTGCTC 338245 30 100.0 36 .............................. TTTAAATCTGGTTTATTTTTTACATTCTTCCAATCC 338311 30 100.0 37 .............................. AAGTGCGTTATTTACGCCTTCTATATGTCCGAATACC 338378 30 100.0 36 .............................. TTTTCATTAGCAATTCCTTTGTACTGCCATCTTCCG 338444 30 100.0 38 .............................. CCTAGTACGCCCAGCATACCCAAAAAAGAACTACTTAA 338512 30 100.0 38 .............................. CTGGAAAGAGGCAATAAAGCATTAGGAATAATAAAATG 338580 30 100.0 38 .............................. CTTACTAACACTTTCAGACCTAGTATTAAAATAATTTT 338648 30 100.0 37 .............................. GTGTTACATCTCCCAATTTCTCCTCATAATACTTTAA 338715 30 100.0 36 .............................. GCTATAGCTAGTATAGTAGATACGTTGCGAGAATGG 338781 30 100.0 37 .............................. AATTAATATTGGCAGTATATGCTATACCATCTATAGC 338848 30 100.0 38 .............................. TATCTAACTCAATATTTTCTTCTTTTACATCCTGTTTA 338916 30 100.0 36 .............................. AAATTAATAAAGATAGTAGGTTAAAGGGTATATTAG 338982 30 100.0 36 .............................. TTATAAAATTCTATTTCTAGTTCTTCTTGAGTATAT 339048 30 100.0 35 .............................. GTCGACCCATTGGAGTTAGACAGATGGGATTTTCA 339113 30 100.0 36 .............................. TTAGCATCTATAATATTTACTTCTTTAATAGTTCTT 339179 30 100.0 35 .............................. ATATGTGATGATGAATTAGAGAAAGTGCTTGAAAG 339244 30 96.7 0 ........................A..... | ========== ====== ====== ====== ============================== ======================================= ================== 34 30 99.9 37 GTATTAGTAGCACCATATTGGAATGTAAAT # Left flank : AAGAATATGAACCATTTAAAATATGGTGGTAGGAGAGATTTAAATGTATGTTATATTAGTTTATGATATAAAAAGTGGTGAGGAGGGGCAGAGAGTTTTAAATAGAACTTTTAAGGTATGTAAAAAATATTTGTCCCATATTCAAAACTCAGTATTTGAAGGAGAATTAGCAGAGTCACAAATAATTAAACTAAAATATGAATTAGATGATATAATAAGAAAAGATAAAGATTCTGTAATATTATTCAAAAGTAGAAATAAAAGATGGTTAACTAAAGATATGTGGGGTAAAAAAGAAGATAGAACCAGTAACTTTATTTGATTGTCTACCTAAGATGATGTTAAAATATAAGGGAGTAGACAATTATAGTTATATTAATGGTTTATAAATTATTTAACATAACTTGTATTATAATAATAGACTATAAGAAATCCCAACTTAGTAGGTAGACAGAAATAGAAGTTATACTATAGACATATAGTGCATCATAGATGAACGC # Right flank : TTGACTGTAACTATAGTATAAATAGGTAAATAGGGACGGTTAATGAATTTTTCAAAAGTATGATATAATAAAAACATAATTTACTTGATGAGGTATGATATGGATTTTAATGAAACAATATATAATAGAATATTAAAATTTGTTAAGGAGAATCCCGATAGTGTTTATTTGCCACAGGATTTTGATGAAGCGGGAAAGAAAGATGCATATTTTATTTTTAATGCGAAATGCGGAACGGAAAAATTTGAAATTGAAAATAGCAATAATTTAATTAAGCTTATATCAAATTATTTAAATGATGAAGCTCAATATAATGATTTAATAGAGTATATTCATGAGTTTCCAATAATAGTATATTATTTTGAGTTTTGTAGAATACTTGAAATGCAAATTAAGGAAAGCTTGTTAAGTAGGAAAAAGGTCATAGAGGTAGGAAAAAAATTTGTCACCGAAAGTAATGATAACGAACAGATAAAGCTTGGCATTGCTTTACTAGGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAGTAGCACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 125-676 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAS01000027.1 Clostridium tetani strain 89.12 contig_0027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 125 30 100.0 34 .............................. AAATACGGAACTATTGTAGTTCTACAATTAGGGT 189 30 100.0 36 .............................. TTAAGATTTACTTCATTTCCCCAACAGTCCCAACCT 255 30 100.0 35 .............................. GTTATGCTGCAACTATGTGCTATGGTTGCAAGAAA 320 30 100.0 36 .............................. TTTATATTTGGATTAACAGTTGTTAATTTAGCACCA 386 30 100.0 34 .............................. TAATATTTAAGTTTTTCTCGAACCTCTGCAAAAC 450 30 100.0 34 .............................. AAAAATAAAAAAAGAGGTAGCTCCTAGCCTAAGC 514 30 100.0 36 .............................. TGCCTTCCTCTAAGTAACTAAACAATTCATTTATCT 580 30 100.0 37 .............................. AAGATAATGAATACCAACCAGAAGAAGCAGCAAAAAC 647 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 99.3 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATGGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTGG # Right flank : AAACTAAGCGAAACTATTAAAAACAGGAAGTGGAAAAATGTGGTACTTGAATTTACTGCCAATTCTTAATTTCAAAAAAACTCCTTTATAATAATATTGTAATATTGAAATATTATTGGTATAATACACTCAAGTAAAGTTTGTTATAAACTTACTTTGATTGTTATAATTGTGGGTTAATTTTATATTTAAGCTAAAGAATTACTAATTCATTCATATCTTAATACTTTTAAAATAGGAGAATGTGTATATGAAAGAATTTAGTATTAATACAGATGTTTATTTTGGAGAAGGCTCTTTAGATAGACTAAATGAAATTAAAAATAAAAGAGTACTAATTGTATGCGATAAGTTTATGGAAACTTCAGGTATGGTTACAAAAGTACAACAAAAGCTTACTGACTGTGAAGTAACCATATACAGTGATATTGTTCCTGACCCATCTGTAGAAGTTATTGCATCTGGTATTCAAAAATTACAGAGTTGTAATGCACAGATTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 73932-74284 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAS01000026.1 Clostridium tetani strain 89.12 contig_0026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 73932 30 100.0 36 .............................. TCATTCATAGCATTGTTAGCAAATTGTGTAGCATTC 73998 30 100.0 34 .............................. TTTATCTTACCCCCAAATATAATCTTTAGTCGAT 74062 30 100.0 34 .............................. ATGTTTTCACTATATTACCACTTCCTTTTATTTT 74126 30 100.0 34 .............................. GCAAATTCTATTATTTTAAGTGATTTCTCTATAT 74190 30 100.0 35 .............................. AAAGGAATGTAATTTAAGTTCTAGAAGTGCAGCAC 74255 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TACTTGTTAAACAAGTTGAAACTTATCAAAGTAGAAGACTAGAAGTTGCAAAAAGTATAGTGGAGGCTATTGGAGGTAATATATACGAGCTGTTATATCATTATTATAAACATGATAAAAAATCATAGCAAAATAAACTTGAAAAAAGCCAATGATATAAAACAAATAATGCAAGTGGAAGGGGAAACTTGGCAAAGATTTTATGGCGAATTTAAAAATATACTTCCAGAGGAATTCGTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCATACAGTTGTACAGGGGAAAACTTGATATTATAAATAAAAGTTTTACCAGGTGATTTTAAATAGGAATATGCTCTAATATATTGATTTATAAGGGTTTATATCCTATTTTGAAATGTAGTTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : ATATACATTAAAAAACCTTAGCCATGTCGTTTAAACCCATGATTATTCTGTTTAAACATCTTATTCTATGGTAATATAATAGGGTAAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGCATATTAAAATTAGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGACAGTATGGGAAAACCACTACTTTATATTTGTTAGAGAAAAGACTAAATCATATGAAAGAATACTTGCCTATAAAAATAAGTTTTGAAGCTATAGATACAGAGGGATATAGTAAAGTTGAAAAATTTTTAAGTAGTATAATGATGCAAATAGTGAACTATTTTAGATTTTCAACCAATAAAGAAATGTATAAATTCATAAAAAATTGTGAAAATCAAATTACTAATATGAATGATTTTAATAGTTTTATAACAGATTTAGTTGAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 76259-76550 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAS01000026.1 Clostridium tetani strain 89.12 contig_0026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 76259 30 100.0 34 .............................. TTAAAATATGAAGATGAAGAAATAACAGAGAAAG 76323 30 100.0 35 .............................. GTGTTAACCCATACTCTACCTTCATTTCCACTTAT 76388 30 100.0 36 .............................. CAAATAAGGTAAAATCTTTGGTTATTTGTGGTTAAT 76454 30 100.0 37 .............................. AGGATTATTGGCAATACTAGTTATAATAGGAGATATC 76521 29 86.7 0 ...A............T.-..........A | T [76535] ========== ====== ====== ====== ============================== ===================================== ================== 5 30 97.3 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AAATGTATATACTAGAACTTAAAATATGGAGAGGGGAAGAATATCACAAAAAAGGACTAAAACAGCTTGGGGAATACTTAAATCAGTACGGATTAGAAGAAGGTTATCTTTTAATATTTGATTTTAGAAAAGCTACAAATTTAATAGGTAAAACTGAAGAAACCCATGTAAATGCAGAAGATAATATTAAAAAGATAATAGAGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAAAAAACTAAAAGCTCTCACATGATGGGAGCTTTTAGTTTTTTAACTTATAGTGTTATGTGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGGAAGTATAGCTTAGAGTGTTGATTTATAAGGGCTTACATACTATTTTTAAATGTAATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATTGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AATAGTTTAAATTGTAATAGTATACTTAACCATAACATGAGATGTTTAATAAAATAATATTATGGAAAAGAGATTTATATTTTAGATCTAATTATTAAATTCAATAGTATAAATTGTAATACTCTTAGAAATAATATATGTATAATCACAATAAAATAAATATAAAAAATAATGTTAATGTACTATTATGGAAACAAAATGATGGATAAAAATGAAGAAAAAATTAAAATTCTCTATTTCAGCAACTTATGAAGATTTAAAAGAAAAAGAAAGGATAGAAATTGATGATATCATTTATATAATTGAATTAGTTTCAGTTATTACATTAATTTTAAAAATCTTTCAATTCATAAATTAAAAGATATATTTTTTTTAAATCCTTTATACTATAGAAATATAATTAGTGTTATAATATGGAATAATATAAAATATTATGGTAAAATATATATTATAATGAAGATATAAGGAGGTGAAAAAGTGAAAATATATGAATTAACATT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 85852-86141 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAS01000026.1 Clostridium tetani strain 89.12 contig_0026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 85852 30 100.0 34 .............................. TAGAAATATTTATAAGCTTCCTTTAAATCTCCAA 85916 30 100.0 34 .............................. CCTAAAAGAGATTATATAAAAAAGTGCAACTCTT 85980 30 100.0 36 .............................. CAACATGAAATTATTGTGAAGTAGGAATTTGATGTT 86046 30 100.0 36 .............................. TTAGATTTTTTATTTATATTTAAAGAAAGTGCATCC 86112 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 99.3 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TTTAGTTTAAAGGAGAGAATGTAGATGAGTAAAAATTTTAATTATAATTATGCATTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAATAGAGTGTTCAAAACCTGTAAAAAGTATTTGTCACATTTTCAAAAATCTGTATTTAGGGGAGAACTTACACCAGCAAATTTTATATTATTAAAAAAAGATTTAAATAAAGTAATAAATGAAGATGAAGATTTTATATGTATAATAAAACTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCACACAGTTGTACAGGGGAAGACTTGATATTATAAATAAAAGTTTTACCAGGTGATTTTAAATAGGAATATGCTGTAAGATATTGATTTATAAGGGTTTATATCCTATTTTGAAATGTAGTTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : ATATACATTAAAAAAACTTAGCCATGTCTTTTAAACCCATGATTATTCTGTCTAAATATCTTATTCTATGCTAATATAATAGGGTGAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAATTAGATAGCATATTAAAATTAGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGGCAGTATGGAAAAACCACTACTTTATACATGCTTGAAAGATATTTAAATAAGTTTAAGGATTATTTAGTCATTTCTATAAGTTTTGAAGGGATTGGTGATTTAATTTTTCAAGATGAGAAGGTATTTTCAAAGGAATTTTTACAGATAATGTCTGATTCTCTTTTACTAAATAGCCAGGCATTGTCTGAGTGTTTAGAGGAACAAAAGCCACATGTAGAAAACTTTATTGACTTATCAAGAGTTATAACCAAGTTTATTGTGAAAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 88263-88424 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAS01000026.1 Clostridium tetani strain 89.12 contig_0026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 88263 30 100.0 38 .............................. TCTAAATCTGGTAGATGGTTTTGAGGTAAGTTTTGTAC 88331 30 100.0 34 .............................. ACAATGAATAAAAAAGAATTAGTAGAAGCTTTAA 88395 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AAGTGGAAGAAACCCATATAAATGCAGAAGATAATATTAAAAAGATAATAGGGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAATAAACAGAGTTCTTGGTTTTAGAGGGAGTTTTTACTCCCCATAAAGCTTAGAAATCGTTATCCAGGGACTTAGCTACTCTTTACTCCCGCTTTAAAGAAAATGGAAGTATTAGAGCTTATCGTCATCGGATAAACTAAAAGCTCTCACATGATGGGAGTTTTTAGTTTTTTAACTTATAAAAATAAGTATATACTTATAGTGTTATGAGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGAAAATATAGCTTAGAGTCTTGATTTATAAGGGGTTACATACTATTTTTAAATGTGATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TTAAGTTCCTTTCTTTTTAGTGGAGTACATAGATAGTATGCAAATGCTCTTAATAGAAATGTAAGGAAAAATATGGTATAATGGCATTACCATAAATTTGTGGGAGTGATATTTTATGAATATCTTAACAAATTGTATTATTGGTTTTATTTTTATTGTAATTGGATTGGTATTAAGGGCATATCCACCGCAGCATATAAATAATAGTCTTGGATATAGAACACCATTTTCTATAAAAAATAAAGACACATGGTATGAGGGGAATCGTTTCTGCGGGACAATACTTTTAATAAGTAGTATTATTTTTATACCATTTTCAATATTAATAAAATATTTATATAGCAATAATTTAAATTTATCAATGGGAATATCGTCATTGAGCTTGTTGATTATTATAATTATAGGTATTGTATATACCGAAATACATTTAAGAATGATGTTTGATAAGAATGGAACAAGAAAATGAGATAGTTAAAGGGAAGTCTAATGACTTCCCTTAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 5 92574-92994 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAS01000026.1 Clostridium tetani strain 89.12 contig_0026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 92574 30 100.0 36 .............................. TCCTTTGAATATCTTTGAAATATGGCTATTGCATAT 92640 30 100.0 35 .............................. ACTAAATCCACATCTTTGTATTTATCTTGTAGCTC 92705 30 100.0 37 .............................. AAATATATATGAGCATAGCTCAAAAGGAGAATTAATA 92772 30 100.0 35 .............................. TTTTGTAAGCATTCATTATCGTTGTTAAAACATCT 92837 30 100.0 34 .............................. GAAGTTTGCCGACCTAGATTGATACGGAACACAC 92901 30 100.0 34 .............................. ATTGCTGTAAGAGAATATATTTTATCTGGATTAA 92965 29 90.0 0 ................-.A...T....... | T [92979] ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.6 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCTTTTGATAATTTAAAAGAGCCAATGGAAGTTGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAGGCAGTAATAACACCTATGGAAAATGATAAAGTAAAGGTGAACTTTACTGAAAAGCAAAGAGCCATAACTAAAGGGCAATCTGTAGTTTTTTATAAAGGTGATTTATTAATAGGCGGAGGAATAATTGAATAAAGTTTCTTTTAATACTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAGGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATAGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TAAATCATTTTGAGAATATACATTTATAATGTGACTATAAAATTTTAGCCCTAAAATAAAAGAAATGGTGAAATGTTTTGGTCATACCCTCAACTACATATATGAGAATAGTTTATTCCTCTCCATTAACATATAATATTTGTCCTGATAGTGGGTAATTTTAAAATTTTTATGCATATTTATATAAAATAGAGTATTACTTTCTTAGGAAAAATAAGTTTTATAAAATAATTATATTTTATATTTATTGATGTTTTATTATATGAGAGCCTTGCTAAATGTATTTTACAGCTATTTATAATAATTGGTATTTAGCCAATCCTAAATATAGGTCTTTGCTCTCATATGCCACACGTACACTTTATTTGAATTAACCTTTAATGAAGTTGCGATTTCATTAAAGGTTAAATTATTGTAATATCTTAAGATTAAAAGCTAGTCATTTTCAATTACTATAGAATTTACTAGTTTATCATGAAATCCTTGATTACTATCATTAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //