Array 1 1289-1017 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKKE01000055.1 Saccharomonospora sp. CUA-673 NODE_5_length_216344_cov_239.448_ID_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1288 28 96.4 33 .....C...................... CATGGGCGAGCTATCGCTGCGGCGACTCCGCGC 1227 28 100.0 33 ............................ GATCCACCCGACATAGCTCAAGTCCAGCTGATT 1166 28 100.0 33 ............................ CAACCTGCCTCGCGGGTGTTCGTGAAGGGCTCC 1105 28 85.7 33 .....C......C.T........A.... GTCGTAGTCCCGGATCCACCGCGGGCCCAGACC 1044 28 82.1 0 ..G..C.......G.........A.G.. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 92.8 33 GTCCGACCCGCGTACGCGGGGATGCTCC # Left flank : CCGCTGGTGATGCCGAGGCGCACCACCAGTTGATTGCCGGTTACGGCTGCTTCCACGATGGTGTCTGCTCGGACAAGCGCGGATGTCGTTTTCAGCCATACTTGAGTCATGTGTCACACCGTAACGAGCGGCGTGACACGGCGCCGACAATTGGCCGTCGGCGCTAGGGTGGAGGCCACGGTCGGCCCCGCACAGCGAGGATCTTCGCAGGATTCCGACATTGATGGTGAGGCTGACCGCCCGGGTCTAGTTGCCCGACGTGGTGATCCGGGTCGACGACCCGCGATAGCTGCCCGGTTGGCATCCGCCACCAGCAGTACCTTTCGGACAGTAAAAACCCGAACGGCTACTGCGGGTTGGGCGGCACCGGGGTGTCGTGCCCGGTGGGGCTGGGCGTGGAGAAGTAGGTCTGGTTTCCGGTGGGCCCTTGGTGTTGGGCTGCAGCTTTGAAACTGAATGAAGGCTGGCTGGCCGTGGACTGTTTGTGCTGGTCAGGAAGT # Right flank : GATGTGGCTCCAGGTCGCGCAGTTGATGTGCGGATATTTGCCACCAGCAGTACCTTTCGGACAATAAAAACCCGAACGGTTACTGCGGGTTGGGTGGCACCGGGGTGTCGTGTCCGGTGGGGCTGGGCGTGGAATAGCTGAGTGACGTGGTCGGCGCGGCGCTCCTCTGCGCGGGTTGAGCTCGTGTCGGTTGCCTGTGGATTGGCGGGAGGACCGCCTCCACTGGGGGCGGTCCTCCCTTCATGGGTGGGTTGGTAATTACCTAGCGTCGTCTGAGATTCGCAGGCGCCAGCCTGCACCGAAGGACACCGTGACCGGTTCCTCAGACCAGTCGGCAACTTGATCTCCTCGTGCTGCCTCCAGGTGTTCACCGTGTCCTGCTTCGGTCACGATGTCTGTCCCGGGAACGTCTGCATCCAGTCCAACGAGCGCCATGGCAGCGTCGAGGAGCTCGTCTAGTTCATCTGCTGGTTCGCCGTCTTGGTCTTCGCCGAGCGGGG # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGACCCGCGTACGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 143-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKKE01000063.1 Saccharomonospora sp. CUA-673 NODE_67_length_12442_cov_257.013_ID_141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 142 28 96.4 31 A........................... GGTGTCGAGTTCGTCGCGGGCCTCGGCCAGC 83 28 100.0 33 ............................ CGAACCCATCAGCCTCACCGCGCTACGTCAGCG 22 22 78.6 0 ......................------ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 91.7 32 GTCCGCCCCGCACCCGCGGGGATCAGCC # Left flank : CACCCGCGACAACCACGTCCTCCTGGTGCAATCACTCACCCACCCCGACCCCGACCGCCTCCCCAGTAACTACGGCGCGGTAGCCACCAAACCCATGGACAACCTCGTCGGACAACTCGACACCGGCGTCCGCGTGCGCTACCGCCTCCGCGCAACACCCGTGCGCTACAACGGCCACAAACCCATCATCCAACCAGGCGAGGACCCTCTCGACTGGTGGACACAACGCGCCCCGAGCCGCGGCCTCGAACTCCACACGACCCACATCACCCACACCGGCACCATCACCGGCCGCAAAAACCCCGACGCACCACGGATCGTGCACCGATACGCGCAATACGAAGGAACCGCCACCATCACCGACCGCGACACCCTGCTCCAAGCCATCACCCACGGCATCGGCCGAGGTCGCGCCTACGGCCTAGGACTCCTCTCCGTCGCCCTCCTCAAAACCGAATGAAAAATGCCGAACCGGTCCACAAACCCCCAGGTCAACAAGT # Right flank : A # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCACCCGCGGGGATCAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 7620-8031 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKKE01000063.1 Saccharomonospora sp. CUA-673 NODE_67_length_12442_cov_257.013_ID_141, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================== ================== 7620 29 82.8 170 T......GA........TC.......... TGTCTAAGCTGGATACGATTCATCGCCCAGTGCCCCGGTCGGCCAAATCCACCAGGGCGCAGGGATACACGACCACCAGTGCCAGCTGCGGTGCCTACGGAACCGGCACTCGTGACATGGCAAACCGAATGCCAAATGCCAAACAACCCAGAGAGCCCAGGTCAAGAAGT C,A [7629,7634] 7821 29 100.0 31 ............................. GGGGTTGACCGTGTTGTACGGTCATTCGCAG 7881 29 100.0 32 ............................. ACGTAGAAGCACACCGGCCGCTCGGCCAGCAG 7942 29 93.1 32 ................T...........C CAGGCATCGATCGGTGCGGCGATGGCCGGATG 8003 29 96.6 0 ..............G.............. | ========== ====== ====== ====== ============================= ========================================================================================================================================================================== ================== 5 29 94.5 66 GTCCGCCCCGCACCCGCGGGGATCAGCCG # Left flank : TGATGACCCGCCACGGCCAACGCGGCCGTGAACGCCGCCGACGCCGCCAACCCAGCCCGCGTCAACCTGGGATCCAACAACAGTGGCAGCACGGTCGCCGCCGCCCGATCATGGCGCACGTACCCGTGCTGCGACTGATCCCACTGCTGCTGAAACGGCGCGGTTGCTTTGCCTATGTCGTGCAGCCCCGCCAGTTCCACCACCAGCCGCCTCGTCATCTCCTCGTCGAGATCAAGACGCTGCGCCAGCCACCGGCGCATACCGGGCCCGATGTGCCGGTCCCACAACGCCGACGCCGCACCCGCCGCATCTACCAGATGCCACACCAGCGGATACGGCTCACCCAAGCCGCGCTCTTTGGCCCACACCTCAAACAAGTACCCCCCCAGGCAGGCTTATACAGATAAGACACTTCGTTGTGAGGCGAACCATAACAGAAGGCTCCGACACATGCCCAGCGATCCCGTGGGTGGCCGGCTAGTCTGGAACAGCCGACAGGC # Right flank : GCCACCGTGGACGTTCCCCGGCGGTGGGATCGGATTGTGTCTGTTCCGCGCGAGCGGGATCTACACGTGGGTCCGTCGTCGCGCCGTGGAACCCAACGTGCGCGCATGGACCACGAGCGCGGCAATGGTGAGTAGACCCGCGGCGGTAGTTCGTGGTTCTGCGGTGGGGTATCCGGTGATGGGTAGGAAGGTGATGGCTTCGGGGATCAGGTTCTGGATCAGACCTGAGCCGTACCAGGTCACGACAGCCAGAGCGCTGGCCCAGAGCGGGCCGACAAATGGGGCCGCGAGTTGAATAAGGGCGGCGAGGGCCAGCACGTTGGTGATGGCGAACAGCCAGTCGGTTCGCCCGGCCACGTGGGGGATGACGGCTGCTGCACACAACACCGGTAGCGCAACACCGGCCAGAGCCGTCGTGGTGGCGACAAGGCGGGCGCGGTGTCCACCAGCGGCGCGCTCCCATTCCCAGAGCCGCGGGCCGGTGATGATGGCGACGACCG # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-3, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCACCCGCGGGGATCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 168522-168195 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKKE01000066.1 Saccharomonospora sp. CUA-673 NODE_6_length_189892_cov_253.703_ID_253, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 168521 29 100.0 24 ............................. CTCTCGCCGGTTGGAGCTGCAGCA Deletion [168469] 168468 29 100.0 32 ............................. TGGACCGCGGCGTGGAACGGGATCCGCACCGC 168407 29 96.6 32 ............................T CAACCCTGGCTGGCCACGGTGGCGATCGCGGC 168346 29 100.0 32 ............................. TCCATACGCACACGTTTCGGCGTGTGCCGACC 168285 29 96.6 32 ............................G GCATACCGGTTCCGCTCCTCTGGCTTTAGCGG G [168263] 168223 29 79.3 0 ..................TT.....CGTA | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 31 GTGCTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : TACCGCCAGCGGAACGTCGGCCAGTTTCGGGAAATACCCCAACCGCTGATACGACTTCAGCCGCACCACCAGGGCCAACAAGTGCTGATCACGCTGGGTCTTGCCCCGCGCCCACACCATCTCCTCAGCGGTCGGGGTGAACGCCTCAGCCAGCTCCCGCGCCGAGACCACCCGCTTGAACCGCGGATACGCGGTGCGATCGATCGAGGTCAACTCCGCATCCCAGCACGGTCGTCAGTCCGGACCGCAAAACCCTAGCCACCGCGGGAAACGCCGCACCACACCGGCATCTGACCAGCACCGATACCTCGCCGCGGCCCCTTTCCTGCGTATCCGGTTCCCACCCCTAAGTCCCCGCCGGCCCTTGGCTGGTGTGGCTGTCCGCGGCGAAGCGCGCAGCCCTGAGCGCTGCTCAGGGCACCGTAGGAGAGTGATCTCCTACTCACCCCCAACTAACTTCATAGCGGGGATACCGACGGTATGAGCACAGGTCAGCGAGT # Right flank : TCAGGGCCTGATAAATCTGCGACCCCGGTGATCCTCCTGTTCGCTCTGTCGCTCACGCCACGGCGTATCAGGGCCTGATATCTGCCTGGCTTCCCGAGTGTCGGTGGCAGGATGCGGGCATGACTGCCAGCACATCATCACAACCCGCTCGGACTGTCGCCATCGCGATGCAGAAGGGCGGCGTGGGCAAGTCGACCTCGACGATTTGCCTTGCTCGTGCCGCGCACATTGCCGGACACCGCACCCTCGTTGTCGACCTCGACGCGCAGGCCAACACCACCAGCGACCTCGTGGCCGAACCTGTGGCTGCCGACGAGGTGACCGTCGCTGACGCGCTCGTCGGGGACGTCGATCTCGCCGACGTGCTAGTGCCGTCGATCTGGTCGACGGTGACGGTGGCGCCTGCGGCGGCGACGTTGTCGGTCGCGATGGATCAGCTCGCCTCGGTGGTGGCCAGGGAGATGCGACTCCGGAAGGCGCTGAAGCCGTTGCTCGGCGAC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 99799-99589 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKKE01000010.1 Saccharomonospora sp. CUA-673 NODE_19_length_99824_cov_233.204_ID_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 99798 28 100.0 33 ............................ GCTGTTCCAGACTGTGAGGCGGCCCAACGGCAA 99737 28 100.0 33 ............................ CGAAGAGGTCGTACCGCAACTGGTGGAGATGTG 99676 28 92.9 33 ....A....................G.. GATCGTGACCAGCGTGGCCTGTTGCCGATCGTG 99615 27 75.0 0 ..T....A..TG.A......-....G.. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.0 33 GTCCGCCCCGCACCCGCGGGGATCAACC # Left flank : TTCTGGGCGACGGTGAACTCCGTGA # Right flank : ATCCATCCTCGCGGTCGGTAGTGCTTATCCACCTTCGCGAGGATCTCGATCAGGCTGAGTGAGTCCGCGACTCTGCCTGCTCACGTGGTTCAGAAGTTGGCCGGTGCCTACACCGGCTCTGAGGTGGATACCGGTGTCGTGGTGCCCCTACCGGGCTGCGCGTATGTCGGACACGACCGGGACGCCTTGGAACGCAAGCCGATCGGGTTTCCGGAAGAACACCCGCAGCGAACGACCGGCAGGCGCTACTTTCCACGCGCGTGGAGGCGTTCCGAGGAACCCGTCGTGGAAGCACTCTCTGTTGAGAACGCCCAAACAGACGTCGAGGTCGTCCTCCTCGTCACTGGTTTCCACACGCACCACTTCCTCGACCCCGTGCGAATCGCCGGCCGTTCCGGTGCGACGCTGGCCGAGACCTGGGCCCAGAGAACGCCCACGCCTATCTAGGCATCGCCGTTCCCAACTTCCCGAACCTTTCCATTACCTGCGGACCGGGGACC # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCACCCGCGGGGATCAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //