Array 1 518109-518672 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFF01000002.1 Streptococcus equi subsp. equi strain NCTC 12092, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 518109 32 100.0 34 ................................ TGCCATGGTTTGTTTGATTTTGTCAGGATGGTTA 518175 32 100.0 33 ................................ TTTAAACTGGAAAATTTTCAAAAATTTATCATC 518240 32 100.0 35 ................................ ATTTTTCCACTCGTGGATCTCAATCAAAGTGTAAT 518307 32 100.0 35 ................................ TTTTAATTCGTCATTTGTAGTTGTGAGGTTAGAAG 518374 32 100.0 34 ................................ TTATTTAAACTATTATGGTATTCAGTTATTTTAA 518440 32 100.0 34 ................................ ACGGTTACTGGTTTTGAGCGTGCGCGACACACGC 518506 32 96.9 35 .....................T.......... TCTGCTAGAACACAGCAGGCAAGTAATCGTTTTAG 518573 32 81.2 35 ........CCAT.C.......T.......... TTTTGTTATAATAAGGACAGGTTAGGGGAGTTCCT 518640 32 81.2 0 ........CCAT.C.......T.......... | T [518670] ========== ====== ====== ====== ================================ =================================== ================== 9 32 95.5 34 GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT # Left flank : GGGATCCCCTATTTTAGCAAGCAGCGATAGCGATTAAGGTAATAATATGGGAATAACGCAAATGACGTAGGAAAAATACGAAACGTTTAACAAAGTAGAGACGCCTGATAATCTTTATATCCGAGAGCATAACGGAACATATTATACTTTTTTTGAATTGGAAGTAGCTTCTGTTCGCCGAATTTTTGAAATTAAGGCTATAGATTTTAAGGAGTATATGTCTGGGAAACACTCAGCAGATGATTTGCTTTTTAAGTCACAAAACGATCGCTGGCCGCCAACGGAAGAAGAGAAAAATCGAATAATGAGAGAAATAGCCAAAGATAGACCAATGGTCCTCATTTCTAATCCTAAAAATCAAATGCTTTTTACCCAAGAAGAGCTAAGAAAACTAATTCCAATTGCGGAGCAAAAATGGATCGATTGGAAGGGAAAGCTGCCAGATGATTATGTCAGTCCTTTGAAATCGATTTGGTTCGGGAAATAAAAAAAGCCCCACG # Right flank : TGCGATACGTGCCTTTACGATGTTGCGACTCCGTCTCGCCCTTTGTGGGTGCGTGGTCCGTATTCTTTGTTTTTCATGAAGGGATAAATTATATCGTATTCATCAAGCTGATTTAAGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTGTTGCAACAGGATTGGTTTTTTCTTGTGATTGCAGATCAGACTTTTCAAAAGAACAAGCACATTATCTCAGCTAGACTGGTGCTTGATAGCTCCTGAGCCCTTGTTTGCTGTAGCTGATAGGATTTTGCTGATGGCCTAGTCAGGCATATCGTATCAAATTCAAGTTTTTTCATGTCACTGTCTATAGTTTGTCTGCCCTACTTTAGGTAGAATAGAGGTAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTGTATTTAG # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT # Alternate repeat : GTCTCGCCCCATACGGGCGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 2 1390898-1389672 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFF01000002.1 Streptococcus equi subsp. equi strain NCTC 12092, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1390897 36 100.0 30 .................................... TGACGAACTACTAGAAGTGTTGGACTTTTT 1390831 36 100.0 31 .................................... CTAACACGTGAAGATGTTCGTGCAAGAGATA 1390764 36 100.0 30 .................................... CCTACACCCGTAGTATATCAAATCAGGACT 1390698 36 100.0 31 .................................... CTTATATCCAGTAATTTGCATACGCAAGTCT 1390631 36 100.0 30 .................................... TTACTACTGGATTAGTTACGTTGGTGGCTC 1390565 36 100.0 30 .................................... GGGTTGACATGGCATATAAGCTTTATACTA 1390499 36 100.0 30 .................................... TCACACTATGACAATTTTGACATTCTTCTT 1390433 36 100.0 30 .................................... CTCTCCTGTGGTGACTATTTGGTGCTGCAG 1390367 36 100.0 30 .................................... AAAAGAAATCTATAATCAGCGTCATGCTAT 1390301 36 100.0 30 .................................... AGCAGCTACCGAGTAGATGAAAATGGTTGT 1390235 36 100.0 30 .................................... GTTGCTGTTTATCTTGGTGATCGCCTGCTC 1390169 36 100.0 30 .................................... TTGCTATACGACCTTTTGACACTTGATTTG 1390103 36 100.0 30 .................................... TATTGTAAATACGGTATTAGCGGCTAGTGA 1390037 36 97.2 30 ......A............................. CAACTATGATCTTAAATATATTTTGTCTCT 1389971 36 100.0 30 .................................... GTCCTAAATAATCTAGGATTAACTATTGCT 1389905 36 100.0 30 .................................... AGGCGATGCCATAAAATATAAAGCTCTTCG 1389839 36 100.0 30 .................................... GTAAGACCCGCTACAACAAAAACCTCTTGG 1389773 36 100.0 30 .................................... CAAAGGAGCTGTTATTCTAGATCCTTTTAT 1389707 36 83.3 0 ..................T......A...TT..T.T | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.0 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAGGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTTTGTATGACTTCCCGCAATACATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGTTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGGAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTACTTGCAGTTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : CCGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCTAATGATGGGTAATACTACGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTCCCCACCAAAGGGGATTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACCCTTACTTTTATTTTTCTACCCTACTATTGGCAGAAAATGACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATCTTTTGGCAATAGCTCGTTTGCTGTTACACCAAAAATGTTATGCAGCTTGATTAACTTTTTGATTGGAGCTTTGCGCTGGCCATTTTCTGTCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //